Information for motif9


Reverse Opposite:

p-value:1e-28
log p-value:-6.521e+01
Information Content per bp:1.680
Number of Target Sequences with motif30.0
Percentage of Target Sequences with motif2.60%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.22%
Average Position of motif in Targets25.0 +/- 11.3bp
Average Position of motif in Background35.0 +/- 8.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0200.1_Zfp187_2/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--GRGGYCCAGG----
NNAGGGACAAGGGCNC

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GRGGYCCAGG
-AGGCCTAG-

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GRGGYCCAGG---
-AGGTCAAGGTCA

MA0146.2_Zfx/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:GRGGYCCAGG----
CAGGCCNNGGCCNN

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GRGGYCCAGG
-AGGCCTNG-

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GRGGYCCAGG
-AGGTCA---

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----GRGGYCCAGG--
NTNNNGGGGTCANGNNN

PB0118.1_Esrra_2/Jaspar

Match Rank:8
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GRGGYCCAGG--
GGCGAGGGGTCAAGGGC

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GRGGYCCAGG--
CTCCAGGGGTCAATTGA

MA0524.1_TFAP2C/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GRGGYCCAGG---
CATGGCCCCAGGGCA