Index of /btracks/erik/HOME_STORAGE
Name
Last modified
Size
Description
Parent Directory
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consensusBlacklist.bed
2011-05-04 17:06
18K
examples.desktop
2015-07-13 16:41
8.8K
crumble.py
2016-01-13 17:23
2.3K
density.py
2016-01-14 01:24
4.0K
query_CTL_crumble.bed
2016-01-16 15:54
25K
query_OIS_crumble.bed
2016-01-16 15:55
30K
CTL_density_cKrox_100000.bed
2016-01-19 17:29
1.7K
OIS_density_cKrox_100000.bed
2016-01-19 17:49
1.7K
OIS_density_cKrox_50000.bed
2016-01-19 17:54
1.6K
CTL_density_cKrox_50000.bed
2016-01-19 17:55
1.4K
new_file.py
2016-10-16 23:30
2.5K
avg_expression_and_ATAC_fold_change_1.5_and_greater_no_dup.bed
2016-10-21 12:40
462K
ATAC_seq_max_TES_location_in_gene_without_TSS_up_regulated_no_dup.bed
2016-10-23 16:53
39K
Sequence_of_ATAC_seq_max_TES_location_in_gene_without_TSS_up_regulated_no_dup.bed
2016-10-23 17:01
494K
max_region_two_standard_dev_above_mean_positive_z_score_diff_ATAC_seq_not_upregulated_25kb_to_TES_without_TSS_z_score_no_Y_no_dup.txt
2016-10-24 18:39
11K
max_region_two_standard_dev_above_mean_positive_z_score_diff_ATAC_seq_upregulated_25kb_to_TES_without_TSS_z_score_no_Y_no_dup.txt
2016-10-24 18:39
765
max_region_two_standard_dev_below_mean_positive_z_score_diff_ATAC_seq_not_upregulated_25kb_to_TES_without_TSS_z_score_no_Y_no_dup.txt
2016-10-24 18:39
0
max_region_two_standard_dev_below_mean_positive_z_score_diff_ATAC_seq_upregulated_25kb_to_TES_without_TSS_z_score_no_Y_no_dup.txt
2016-10-24 18:39
0
fold_change_avg_all_genes_down_regulated_ATAC_auc.bed
2016-11-10 18:00
339K
fold_change_avg_all_genes_up_regulated_ATAC_auc.bed
2016-11-10 18:00
621K
Values_PD24_PD80_ATAC_seq_auc_enhancers_of_sig_expression_genes_with_h3k4me1.bed
2016-11-10 23:31
119K
ATAC_seq_and_expression_fold_change_at_enhancers_of_sig_exp_genes_with_H3K4me1.bed
2016-11-10 23:45
68K
ATAC_seq_TES_PD33_PD75_z_score_without_TSS_nY_ndup_not_sig_up_reg_pos_pro_sen_fd_ch_diff.bed
2017-01-17 00:34
2.0M
ATAC_seq_TES_PD33_PD75_z_score_without_TSS_nY_ndup_sig_up_reg_pos_pro_sen_fd_ch_diff.bed
2017-01-17 00:34
152K
AUC_PD75_100bp_window_PD75-Payel-8ul-novel-ATAC-seq-peaks-in-last_half_of_genes_no_dup.bed
2017-02-01 01:41
121K
test2.txt
2017-02-05 17:03
123K
test1.txt
2017-02-05 17:28
13K
AUC_diff_PD24_PD80_Parisha_all_novel_ATAC_peaks_from_Payel.bed
2017-02-07 19:45
506K
R_heatmap_maker_zscore.R
2017-02-21 22:23
541
all_files_together.txt
2017-02-21 22:42
33M
Ensembl.Genes.hg19.bed
2017-02-22 09:18
44M
cryptic_genes_all_fields.txt
2017-02-22 09:43
47K
all_values.txt
2017-02-24 00:31
50M
all_max_values.bed
2017-02-24 09:42
1.4M
output.txt
2017-03-02 01:16
498K
python-fit-1.0.0.tar.gz
2017-03-18 13:57
6.4K
output_chrY_test.out
2017-03-18 14:40
873K
output_chr10_test_small.out
2017-03-21 01:21
709K
output_chr19_test_small.out
2017-03-21 01:40
169K
all_most_likely_initiation_points_fixed_window_400.bed
2017-03-21 02:20
2.5M
all_most_likely_initiation_points_splice_redudant_removed_fixed_window_400.bed
2017-03-21 02:20
1.5M
output_chr13_test_small.out
2017-03-22 08:57
565K
AUC_fold_change_up_Expression_all_genes_1kb_promoters_PD33_PD75_Payel_ATAC.bed
2017-03-24 21:32
660K
genes_overlap_with_novel_ATAC_seq_peaks_expression_AUC_difference.bed
2017-03-25 13:19
44K
not_found_exons.bed
2017-03-27 01:58
11K
RefSeq.Genes.hg19.bed
2017-03-27 01:58
9.0M
all_most_likely_initiation_points_filtered_no_redudant_splice_isoforms_cryptic_part_methylation_RNA_seq_fold_change_with_exons_non_overlapping_non_close_to_promoters.bed
2017-03-28 20:19
2.5M
RNA_seq_pro_sen.all
2017-03-28 22:34
2.4M
cryptic_initiation_sites_filtered_final.bed
2017-04-07 18:58
113K
genes_of_562_with_cryptic_initiation_sites.bed
2017-04-07 18:58
26K
cryptic_genes_562_list_overlap_with_CAPH2.bed
2017-04-07 18:58
1.6K
cryptic_regions_562_list_overlap_with_CAPH2.bed
2017-04-07 19:13
3.7K
weiwei_cryptic_Refseq_with_CAPH2_binding_sites.bed
2017-04-07 19:20
2.1K
weiwei_cryptic_genes_ensenbl.txt
2017-04-07 19:24
7.8K
cryptic_genes_sequence.bed
2017-04-20 23:31
116K
cryptic_genes_protein_sequences.bed
2017-04-20 23:43
242K
Motifs_3/
2017-05-03 01:20
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all_values_with_BATF.bed
2017-05-03 19:41
169M
Motifs_BATF_peaks_pro/
2017-05-18 14:18
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Motifs_BATF_peaks_sen/
2017-05-18 14:18
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all_values_with_BATF_with_nuc_atac_248_with_CBP_p300_H3K36me3.bed
2017-05-18 17:18
245M
for_Neil.tar.gz
2017-05-18 18:35
1.1M
all_values_with_BATF_with_CBP_p300_H3K36me3.bed
2017-05-18 21:29
215M
output_all_values_ATAC_H3K36me3.bed
2017-05-19 14:08
28M
RefSeq.Genes.mm10.bed
2017-05-26 00:49
5.2M
mm10.chrom.sizes
2017-05-26 01:00
1.4K
profile_of_H3K36me3_in_all_genes.bed
2017-06-01 12:03
69M
Heatmap_of_profile_of_H3K36me3_in_all_genes.png
2017-06-01 13:09
264K
final_cryptic_file.bed
2017-06-04 12:56
1.7M
all_values_at_canonical_promoters.bed
2017-06-15 23:15
98M
tss_regions_of_genes_with_expression_and_low_fold_change_12_overlap_pro_sen_procap_peaks.bed
2017-06-29 14:51
115K
sequence_of_canonical_promoters.bed
2017-06-29 14:56
2.7M
complement_overlap_of_homologs_genes_with_novel_procap_old_mouse_human_novel_procap.txt
2017-10-01 18:48
12K
overlap_of_homologs_genes_with_novel_procap_old_mouse_human_novel_procap.txt
2017-10-01 18:48
8.6K
all_values_at_procap_peaks_in_genes_larger_4_rpm.bed
2017-12-14 02:06
332M
all_values_at_procap_peaks_in_genes_larger_4_rpm_5kb.bed
2017-12-14 03:57
370M
Motifs_novel_procap_peaks_in_sen_in_last_half_of_genes_l_t_4/
2017-12-21 02:51
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refseq_genes_IMR90_hg19_overlap_with_possible_cryptic_procap_locations_l_4.bed
2017-12-22 01:21
223K
test.txt
2017-12-22 01:37
1.9M
sen_only_pro_cap_peaks_tss_last_half_of_gene_and_3500bp_from_nearest_promoter_l_t_4.bed
2017-12-22 02:01
351K
pro_sen_procap.all
2018-01-19 03:53
8.8M
RefSeq.Genes.merged.hg19.bed
2018-01-20 20:15
527K
RefSeq.Genes.merged_with_novel_procap_peak.hg19.bed
2018-01-20 20:15
79K
RefSeq.Genes.merged.mm10.bed
2018-01-20 20:27
501K
RefSeq.Genes.merged_with_novel_procap_peak.mm10.bed
2018-01-20 20:27
24K
all_values_at_procap_peaks_in_genes_larger_4_rpm_with_RNA_seq.bed
2018-01-21 15:53
380M
genes_merged_with_novel_procap_peak_H3K36me3_H3K79me_DNA_methyl.bed
2018-01-30 02:45
43M
all_genes_merged_with_novel_procap_peak_H3K36me3_H3K79me_DNA_methyl.bed
2018-01-30 04:05
254M
Overexpression_ProCap/
2018-02-09 03:29
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ProCap-BATF-overlap-CD27_70-overexpression-peaks-larger-4-rpm-auc-fc-larger-than-4-last_half.not_Promoter.hg19.txt
2018-02-20 03:25
8.1K
ProCap-TGFb-10-overlap-TGFb-0-overexpression-peaks-larger-4-rpm-auc-fc-larger-than-4-last_half.not_Promoter.hg19.txt
2018-02-20 03:25
26K
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