Information for motif13


Reverse Opposite:

p-value:1e-34
log p-value:-7.960e+01
Information Content per bp:1.676
Number of Target Sequences with motif192.0
Percentage of Target Sequences with motif4.40%
Number of Background Sequences with motif55.4
Percentage of Background Sequences with motif1.57%
Average Position of motif in Targets156.7 +/- 83.4bp
Average Position of motif in Background162.1 +/- 78.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:1
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GGGTATTTCC
GGGAATTTCC

MA0107.1_RELA/Jaspar

Match Rank:2
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGGTATTTCC
GGGAATTTCC

MF0003.1_REL_class/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GGGTATTTCC
GGGGATTTCC

MA0101.1_REL/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:forward strand
Alignment:GGGTATTTCC
GGGGATTTCC

MA0105.3_NFKB1/Jaspar

Match Rank:5
Score:0.85
Offset:0
Orientation:forward strand
Alignment:GGGTATTTCC-
GGGAATTTCCC

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:6
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GGGTATTTCC-
NGGGGATTTCCC

MA0136.1_ELF5/Jaspar

Match Rank:7
Score:0.73
Offset:3
Orientation:forward strand
Alignment:GGGTATTTCC--
---TACTTCCTT

MA0156.1_FEV/Jaspar

Match Rank:8
Score:0.72
Offset:4
Orientation:reverse strand
Alignment:GGGTATTTCC--
----ATTTCCTG

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.72
Offset:4
Orientation:forward strand
Alignment:GGGTATTTCC----
----ATTTCCTGTN

PB0012.1_Elf3_1/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GGGTATTTCC-----
--TTACTTCCTNGTN