Information for motif20


Reverse Opposite:

p-value:1e-28
log p-value:-6.625e+01
Information Content per bp:1.865
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.66%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets149.6 +/- 89.7bp
Average Position of motif in Background53.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0085.1_Irx4/Jaspar

Match Rank:1
Score:0.73
Offset:-4
Orientation:forward strand
Alignment:----AACATGTGAAAT-
AATATACATGTAAAACA

PH0086.1_Irx5/Jaspar

Match Rank:2
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----AACATGTGAAAT-
AATATACATGTAAAATT

PH0083.1_Irx3_1/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AACATGTGAAAT-
AAAATACATGTAATACT

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AACATGTGAAAT-
AATATACATGTAATATA

PB0013.1_Eomes_1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---AACATGTGAAAT--
GAAAAGGTGTGAAAATT

PH0082.1_Irx2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----AACATGTGAAAT-
TAAATACATGTAAAATT

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AACATGTGAAAT-
AAAATACATGTAAAAAT

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:AACATGTGAAAT
--CSTGGGAAAD

Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AACATGTGAAAT
-AGGTGTGAAM-

PB0148.1_Mtf1_2/Jaspar

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:AACATGTGAAAT---
-AAATAAGAAAAAAC