Information for motif27


Reverse Opposite:

p-value:1e-13
log p-value:-3.086e+01
Information Content per bp:1.985
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets103.1 +/- 78.0bp
Average Position of motif in Background112.8 +/- 80.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.85
Offset:-1
Orientation:reverse strand
Alignment:-TGCGTGCA-
TTGCGTGCVA

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:2
Score:0.82
Offset:0
Orientation:forward strand
Alignment:TGCGTGCA
TGCGTG--

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TGCGTGCA
TACGTGCV

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TGCGTGCA
GGACGTGC-

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TGCGTGCA------
NTNTATGTGCACATNNN

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TGCGTGCA
GGGTACGTGC-

PB0044.1_Mtf1_1/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TGCGTGCA----
GGGCCGTGTGCAAAAA

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGTGCA---
NNGCGTGTGTGCNGCN

PB0026.1_Gm397_1/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TGCGTGCA------
NNGTATGTGCACATNNN

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----TGCGTGCA---
NNNNTTGTGTGCTTNN