Information for motif28


Reverse Opposite:

p-value:1e-13
log p-value:-3.011e+01
Information Content per bp:1.530
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif1.01%
Number of Background Sequences with motif9.7
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets134.4 +/- 76.3bp
Average Position of motif in Background187.5 +/- 78.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.84
Offset:2
Orientation:reverse strand
Alignment:CTTAAGTA-
--TAAGTAT

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:2
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAGTA------
NTNNTTAAGTGGNTNAN

MA0025.1_NFIL3/Jaspar

Match Rank:3
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTTAAGTA----
-TTATGTAACAT

PH0153.1_Prop1/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CTTAAGTA-----
GNNTNTTAATTAATNCN

PH0112.1_Nkx2-3/Jaspar

Match Rank:5
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CTTAAGTA-------
CTTTAAGTACTTAATG

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTTAAGTA--
-TTAAGTGGA

PH0004.1_Nkx3-2/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTTAAGTA------
NTNNTTAAGTGGTTANN

PH0117.1_Nkx3-1/Jaspar

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAGTA-------
NATTTAAGTACTTANNA

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTTAAGTA--
CTYRAGTGSY

PH0175.1_Vax2/Jaspar

Match Rank:10
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CTTAAGTA------
GNCTTAATTAGTGNNN