Information for motif30


Reverse Opposite:

p-value:1e-10
log p-value:-2.495e+01
Information Content per bp:1.530
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif3.6
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets133.3 +/- 87.1bp
Average Position of motif in Background132.0 +/- 61.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0040.1_Hmbox1/Jaspar

Match Rank:1
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTAA----
GAAAACTAGTTAACATC

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CTAGGTAA----
-CAGGTAAGTAT

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CTAGGTAA-----
ANNNCTAGTTAACNGNN

MA0025.1_NFIL3/Jaspar

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTAGGTAA---
TTATGTAACAT

MA0072.1_RORA_2/Jaspar

Match Rank:5
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTAA-
TATAAGTAGGTCAA

MA0071.1_RORA_1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTAA
ATCAAGGTCA

MA0141.2_Esrrb/Jaspar

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CTAGGTAA
AGCTCAAGGTCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:8
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTAGGTAA
--AGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTAGGTAA-
TCAAGGTCAN

MA0037.2_GATA3/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CTAGGTAA--
--AGATAAGA