Information for motif4


Reverse Opposite:

p-value:1e-84
log p-value:-1.943e+02
Information Content per bp:1.632
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif2.17%
Number of Background Sequences with motif4.4
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets136.8 +/- 61.2bp
Average Position of motif in Background145.2 +/- 35.4bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:GCCACHAGAGGG--------
GCCASCAGGGGGCGCYVNNG

MA0139.1_CTCF/Jaspar

Match Rank:2
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--GCCACHAGAGGG-----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:3
Score:0.85
Offset:-2
Orientation:reverse strand
Alignment:--GCCACHAGAGGG------
TGGCCACCAGGTGGCACTNT

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCCACHAGAGGG-
---AACAGATGGC

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GCCACHAGAGGG-
-----CAGATGGC

PB0101.1_Zic1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GCCACHAGAGGG-
CACCCCCGGGGGGG

PB0102.1_Zic2_1/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCACHAGAGGG--
ACCCCCCCGGGGGGN

PB0103.1_Zic3_1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCACHAGAGGG--
NCCCCCCCGGGGGGN

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GCCACHAGAGGG---
---AACAGATGGTCN

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCCACHAGAGGG
CACAGCAGGGGG