Information for motif6


Reverse Opposite:

p-value:1e-60
log p-value:-1.400e+02
Information Content per bp:1.644
Number of Target Sequences with motif538.0
Percentage of Target Sequences with motif12.32%
Number of Background Sequences with motif200.9
Percentage of Background Sequences with motif5.71%
Average Position of motif in Targets154.2 +/- 80.6bp
Average Position of motif in Background155.3 +/- 97.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:1
Score:0.96
Offset:0
Orientation:forward strand
Alignment:RAVCAGCTGY
NAHCAGCTGD

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:reverse strand
Alignment:RAVCAGCTGY
CAGCAGCTGN

E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:3
Score:0.95
Offset:0
Orientation:forward strand
Alignment:RAVCAGCTGY
NNACAGCTGC

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:4
Score:0.95
Offset:0
Orientation:forward strand
Alignment:RAVCAGCTGY
BAACAGCTGT

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:5
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-RAVCAGCTGY-
NNAGCAGCTGCT

Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:RAVCAGCTGY
NAACAGCTGT

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.95
Offset:1
Orientation:forward strand
Alignment:RAVCAGCTGY
-AACAGCTG-

MA0521.1_Tcf12/Jaspar

Match Rank:8
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:RAVCAGCTGY-
NNGCAGCTGTT

MA0500.1_Myog/Jaspar

Match Rank:9
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:RAVCAGCTGY-
NNGCAGCTGTC

MA0499.1_Myod1/Jaspar

Match Rank:10
Score:0.92
Offset:1
Orientation:forward strand
Alignment:RAVCAGCTGY----
-TGCAGCTGTCCCT