Information for motif1


Reverse Opposite:

p-value:1e-112
log p-value:-2.596e+02
Information Content per bp:1.626
Number of Target Sequences with motif92.0
Percentage of Target Sequences with motif9.36%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets159.5 +/- 79.5bp
Average Position of motif in Background121.1 +/- 23.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL006.1_BREu/Jaspar

Match Rank:1
Score:0.83
Offset:-2
Orientation:forward strand
Alignment:--CGCGCCAA
AGCGCGCC--

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:CGCGCCAA
--TGCCAA

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----CGCGCCAA----
CCTTCGGCGCCAAAAGG

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----CGCGCCAA----
TACGCCCCGCCACTCTG

PB0113.1_E2F3_2/Jaspar

Match Rank:5
Score:0.77
Offset:-5
Orientation:forward strand
Alignment:-----CGCGCCAA----
AGCTCGGCGCCAAAAGC

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCCAA---
ANCGCGCGCCCTTNN

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCCAA---
NTCGCGCGCCTTNNN

E2F(E2F)/Cell-Cycle-Exp/Homer

Match Rank:8
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCCAA
TTTTCGCGCGAA

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:9
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----CGCGCCAA
VDTTTCCCGCCA-

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CGCGCCAA
DTTTCCCGCC--