Information for motif11


Reverse Opposite:

p-value:1e-55
log p-value:-1.277e+02
Information Content per bp:1.681
Number of Target Sequences with motif55.0
Percentage of Target Sequences with motif5.60%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets145.0 +/- 86.8bp
Average Position of motif in Background75.3 +/- 34.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--GGCGGCAGCA---
ADGGYAGYAGCATCT

MA0117.1_Mafb/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GGCGGCAGCA
-NCGTCAGC-

MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGCGGCAGCA--
AGCAGCTGCTNN

MA0024.2_E2F1/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GGCGGCAGCA
CGGGCGGGAGG-

MA0500.1_Myog/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCGGCAGCA-
GACAGCTGCAG

POL011.1_XCPE1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGCGGCAGCA
GGGCGGGACC-

MA0499.1_Myod1/Jaspar

Match Rank:7
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGCGGCAGCA
NGNGACAGCTGCN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCGGCAGCA
ANCAGCTG--

MA0521.1_Tcf12/Jaspar

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCGGCAGCA-
AACAGCTGCAG

PB0003.1_Ascl2_1/Jaspar

Match Rank:10
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---GGCGGCAGCA----
CTCAGCAGCTGCTACTG