Information for motif13


Reverse Opposite:

p-value:1e-51
log p-value:-1.188e+02
Information Content per bp:1.642
Number of Target Sequences with motif298.0
Percentage of Target Sequences with motif30.32%
Number of Background Sequences with motif53.7
Percentage of Background Sequences with motif12.20%
Average Position of motif in Targets160.6 +/- 86.7bp
Average Position of motif in Background146.7 +/- 68.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0027.1_Gmeb1_1/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:reverse strand
Alignment:----CWWACGTAAWCA-
NNNTNGTACGTAANNNN

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CWWACGTAAWCA
BGCACGTA----

MA0030.1_FOXF2/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:forward strand
Alignment:CWWACGTAAWCA--
CAAACGTAAACAAT

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:4
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:CWWACGTAAWCA
---ACGTCA---

MA0025.1_NFIL3/Jaspar

Match Rank:5
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CWWACGTAAWCA
-TTATGTAACAT

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:6
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CWWACGTAAWCA
-GCACGTACCC-

MA0031.1_FOXD1/Jaspar

Match Rank:7
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CWWACGTAAWCA-
-----GTAAACAT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CWWACGTAAWCA
--AAAGTAAACA

MA0043.1_HLF/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CWWACGTAAWCA
NATTACGTAACC-

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:10
Score:0.67
Offset:2
Orientation:forward strand
Alignment:CWWACGTAAWCA
--AAAGTAAACA