Information for motif23


Reverse Opposite:

p-value:1e-36
log p-value:-8.401e+01
Information Content per bp:1.522
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.17%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets140.1 +/- 83.6bp
Average Position of motif in Background170.9 +/- 54.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0095.2_YY1/Jaspar

Match Rank:1
Score:0.90
Offset:0
Orientation:forward strand
Alignment:CAAGATGGCAGC
CAAGATGGCGGC

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:CAAGATGGCAGC
CAAGATGGCGGC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAAGATGGCAGC
AACAGATGGC---

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:4
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAAGATGGCAGC-
AAGGCCAGATGGTCCGG

MA0461.1_Atoh1/Jaspar

Match Rank:5
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAAGATGGCAGC
-CAGATGGC---

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------CAAGATGGCAGC--
TGGCCACCAGGTGGCACTNT

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CAAGATGGCAGC
AACAKATGGY---

MA0597.1_THAP1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CAAGATGGCAGC
--TNNGGGCAG-

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CAAGATGGCAGC
VNAVCAGCTGGC---

MA0161.1_NFIC/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CAAGATGGCAGC
----TTGGCA--