Information for motif24


Reverse Opposite:

p-value:1e-36
log p-value:-8.317e+01
Information Content per bp:1.530
Number of Target Sequences with motif108.0
Percentage of Target Sequences with motif10.99%
Number of Background Sequences with motif11.9
Percentage of Background Sequences with motif2.70%
Average Position of motif in Targets135.2 +/- 81.4bp
Average Position of motif in Background174.9 +/- 67.1bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:1
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTTTCGTGCG-
-TTGCGTGCVA

E2F(E2F)/Cell-Cycle-Exp/Homer

Match Rank:2
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTTTCGTGCG--
TTTTCGCGCGAA

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CTTTCGTGCG
--TACGTGCV

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-CTTTCGTGCG-
VDTTTCCCGCCA

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:5
Score:0.59
Offset:0
Orientation:forward strand
Alignment:CTTTCGTGCG
ATTTCCTGTN

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTTTCGTGCG
DTTTCCCGCC

HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CTTTCGTGCG
GGGTACGTGC-

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTTTCGTGCG
--TGCGTG--

PB0208.1_Zscan4_2/Jaspar

Match Rank:9
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---CTTTCGTGCG---
NNNNTTGTGTGCTTNN

T1ISRE(IRF)/Ifnb-Exp/Homer

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CTTTCGTGCG-
ACTTTCGTTTCT