Information for motif29


Reverse Opposite:

p-value:1e-29
log p-value:-6.696e+01
Information Content per bp:1.765
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif4.58%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.67%
Average Position of motif in Targets150.5 +/- 82.0bp
Average Position of motif in Background174.1 +/- 67.2bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0048.1_Hoxa13/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTAGGAGTG--
ANATTTTACGAGNNNN

PH0068.1_Hoxc13/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTAGGAGTG--
NAATTTTACGAGNTNN

PB0006.1_Bcl6b_1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--TTTTTAGGAGTG--
TCTTTCGAGGAATTTG

PH0047.1_Hoxa11/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTAGGAGTG--
NNGTTTTACGACTTTA

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------TTTTTAGGAGTG
GNATTTTTTTTTTGANC-

PH0076.1_Hoxd11/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTAGGAGTG--
ANNATTTTACGACNTNA

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTTTTAGGAGTG
-TTTTATTRGN-

PH0065.1_Hoxc10/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTAGGAGTG--
ANNTTTTACGACNTNN

MA0463.1_Bcl6/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTAGGAGTG
NGCTTTCTAGGAAN-

PH0066.1_Hoxc11/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TTTTTAGGAGTG--
NNNTTTTACGACNTTN