Information for motif30


Reverse Opposite:

p-value:1e-28
log p-value:-6.671e+01
Information Content per bp:1.508
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif3.56%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets159.5 +/- 74.8bp
Average Position of motif in Background156.5 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:GCCATCTGTTTG
GCCATCTGTT--

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:2
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GCCATCTGTTTG
RCCATMTGTT--

MA0461.1_Atoh1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GCCATCTGTTTG
GCCATCTG----

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--GCCATCTGTTTG
CGACCATCTGTT--

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:5
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCCATCTGTTTG
GCCAGCTGBTNB

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----GCCATCTGTTTG-
CCNNACCATCTGGCCTN

PB0047.1_Myf6_1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--GCCATCTGTTTG--
CNGACACCTGTTCNNN

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:8
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:GCCATCTGTTTG
--CAGCTGTT--

MA0058.2_MAX/Jaspar

Match Rank:9
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCCATCTGTTTG
-CCATGTGCTT-

MA0521.1_Tcf12/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-GCCATCTGTTTG
NNGCAGCTGTT--