Information for motif34


Reverse Opposite:

p-value:1e-18
log p-value:-4.163e+01
Information Content per bp:1.759
Number of Target Sequences with motif46.0
Percentage of Target Sequences with motif4.68%
Number of Background Sequences with motif4.1
Percentage of Background Sequences with motif0.92%
Average Position of motif in Targets170.6 +/- 85.1bp
Average Position of motif in Background152.1 +/- 69.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0095.2_YY1/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGAGGCCCTCTT-
-GCNGCCATCTTG

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AGAGGCCCTCTT-
-GCCGCCATCTTG

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:AGAGGCCCTCTT
CTAGGCCT----

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.53
Offset:2
Orientation:forward strand
Alignment:AGAGGCCCTCTT
--AGGCCTNG--

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:5
Score:0.52
Offset:-4
Orientation:reverse strand
Alignment:----AGAGGCCCTCTT
GGTTAGAGACCT----

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--AGAGGCCCTCTT---
GGTCCCGCCCCCTTCTC

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----AGAGGCCCTCTT-
AAGCATACGCCCAACTT

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.48
Offset:4
Orientation:reverse strand
Alignment:AGAGGCCCTCTT
----GCCATCTG

PB0053.1_Rara_1/Jaspar

Match Rank:9
Score:0.46
Offset:-4
Orientation:forward strand
Alignment:----AGAGGCCCTCTT
TCTCAAAGGTCACCTG

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:10
Score:0.46
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGCCCTCTT
TTGAGTGSTT-----