Information for motif38


Reverse Opposite:

p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.719
Number of Target Sequences with motif53.0
Percentage of Target Sequences with motif5.39%
Number of Background Sequences with motif8.1
Percentage of Background Sequences with motif1.83%
Average Position of motif in Targets136.6 +/- 80.9bp
Average Position of motif in Background172.2 +/- 57.5bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0068.1_Sox1_1/Jaspar

Match Rank:1
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AATTCATTCTTG
AATCAATTCAATAATT

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--AATTCATTCTTG--
NNCATTCATTCATNNN

PB0070.1_Sox30_1/Jaspar

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATTCATTCTTG---
ANNTCCATTGTTCNNN

MA0135.1_Lhx3/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AATTCATTCTTG
AAATTAATTAATC

PH0038.1_Hlx/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AATTCATTCTTG
TGTAATTAATTATGG

PB0074.1_Sox8_1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AATTCATTCTTG----
GTATCTATTGTTCTTTA

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AATTCATTCTTG
TAATTGATTA---

PH0142.1_Pou1f1/Jaspar

Match Rank:8
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AATTCATTCTTG
GANTTAATTAATTANNN

PH0019.1_Dbx2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AATTCATTCTTG---
NAATTAATTAATTNNN

PB0063.1_Sox13_1/Jaspar

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AATTCATTCTTG----
AANTTATTGTTCTNNA