Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 983)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 439)	% of Background Sequences with Motif
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-53	-1.240e+02	0.0000	108.0	10.99%	7.2	1.64%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-44	-1.017e+02	0.0000	114.0	11.60%	10.4	2.35%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-32	-7.529e+01	0.0000	93.0	9.46%	9.5	2.15%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-29	-6.744e+01	0.0000	173.0	17.60%	30.4	6.90%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-25	-5.769e+01	0.0000	41.0	4.17%	2.6	0.59%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-21	-4.874e+01	0.0000	66.0	6.71%	7.2	1.63%
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-20	-4.740e+01	0.0000	179.0	18.21%	38.2	8.68%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-20	-4.705e+01	0.0000	146.0	14.85%	28.3	6.43%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-18	-4.329e+01	0.0000	125.0	12.72%	23.7	5.38%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-17	-4.117e+01	0.0000	133.0	13.53%	26.7	6.06%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-15	-3.652e+01	0.0000	97.0	9.87%	17.6	3.98%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-15	-3.547e+01	0.0000	23.0	2.34%	0.3	0.08%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-15	-3.492e+01	0.0000	142.0	14.45%	31.7	7.19%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-14	-3.335e+01	0.0000	236.0	24.01%	64.7	14.69%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e-14	-3.328e+01	0.0000	313.0	31.84%	93.3	21.18%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-14	-3.238e+01	0.0000	145.0	14.75%	33.9	7.70%
CEBP(bZIP)/CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-13	-3.172e+01	0.0000	177.0	18.01%	44.5	10.10%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-12	-2.910e+01	0.0000	176.0	17.90%	45.4	10.31%
E-box(HLH)/Promoter/Homer	SSGGTCACGTGA	1e-12	-2.853e+01	0.0000	20.0	2.03%	0.5	0.11%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-12	-2.853e+01	0.0000	20.0	2.03%	0.0	0.00%
USF1(HLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-11	-2.573e+01	0.0000	57.0	5.80%	9.7	2.20%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-10	-2.395e+01	0.0000	267.0	27.16%	82.3	18.69%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-9	-2.252e+01	0.0000	54.0	5.49%	9.3	2.11%
Usf2(HLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-9	-2.221e+01	0.0000	42.0	4.27%	6.6	1.49%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-9	-2.218e+01	0.0000	68.0	6.92%	13.2	3.00%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e-9	-2.159e+01	0.0000	202.0	20.55%	59.6	13.53%
Max(HLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-9	-2.123e+01	0.0000	77.0	7.83%	16.5	3.75%
BMAL1(HLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-8	-1.970e+01	0.0000	193.0	19.63%	57.8	13.11%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-8	-1.960e+01	0.0000	100.0	10.17%	24.1	5.46%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e-8	-1.924e+01	0.0000	68.0	6.92%	14.7	3.34%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-8	-1.892e+01	0.0000	102.0	10.38%	25.6	5.82%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-8	-1.845e+01	0.0000	116.0	11.80%	30.7	6.98%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e-7	-1.835e+01	0.0000	110.0	11.19%	28.2	6.41%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e-7	-1.833e+01	0.0000	295.0	30.01%	98.1	22.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-7	-1.831e+01	0.0000	206.0	20.96%	63.0	14.30%
bHLHE40(HLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-7	-1.758e+01	0.0000	34.0	3.46%	5.9	1.35%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e-7	-1.714e+01	0.0000	45.0	4.58%	8.6	1.96%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-7	-1.702e+01	0.0000	25.0	2.54%	3.4	0.76%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-7	-1.644e+01	0.0000	33.0	3.36%	5.6	1.27%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-6	-1.610e+01	0.0000	140.0	14.24%	40.2	9.11%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-6	-1.608e+01	0.0000	14.0	1.42%	0.0	0.00%
BMYB(HTH)/Hela-BMYB-ChIPSeq(GSE27030)/Homer	NHAACBGYYV	1e-6	-1.606e+01	0.0000	242.0	24.62%	79.9	18.13%
bZIP:IRF/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-6	-1.559e+01	0.0000	82.0	8.34%	20.5	4.65%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-6	-1.551e+01	0.0000	179.0	18.21%	55.2	12.52%
CLOCK(HLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-6	-1.505e+01	0.0000	69.0	7.02%	16.1	3.65%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer	CYAAAAATAG	1e-6	-1.494e+01	0.0000	84.0	8.55%	21.8	4.94%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-6	-1.482e+01	0.0000	56.0	5.70%	12.6	2.85%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-6	-1.478e+01	0.0000	180.0	18.31%	56.8	12.88%
MyoD(HLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-6	-1.453e+01	0.0000	126.0	12.82%	36.9	8.37%
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e-6	-1.422e+01	0.0000	13.0	1.32%	2.0	0.45%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e-6	-1.422e+01	0.0000	13.0	1.32%	2.0	0.45%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-5	-1.307e+01	0.0000	60.0	6.10%	14.3	3.25%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e-5	-1.306e+01	0.0000	101.0	10.27%	28.8	6.54%
HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-5	-1.285e+01	0.0000	47.0	4.78%	10.1	2.29%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-5	-1.264e+01	0.0000	103.0	10.48%	29.8	6.76%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-5	-1.243e+01	0.0000	12.0	1.22%	1.3	0.29%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-5	-1.160e+01	0.0000	136.0	13.84%	42.2	9.58%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-4	-1.117e+01	0.0001	72.0	7.32%	19.7	4.47%
ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-4	-1.073e+01	0.0001	11.0	1.12%	2.0	0.45%
NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer	GGAAATTCCC	1e-4	-1.073e+01	0.0001	11.0	1.12%	0.9	0.20%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e-4	-1.073e+01	0.0001	11.0	1.12%	0.8	0.18%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-4	-1.040e+01	0.0001	59.0	6.00%	15.5	3.51%
c-Myc/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-4	-1.038e+01	0.0001	56.0	5.70%	14.1	3.21%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-4	-1.028e+01	0.0001	101.0	10.27%	30.2	6.84%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e-4	-9.886e+00	0.0002	198.0	20.14%	68.4	15.52%
Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e-4	-9.832e+00	0.0002	137.0	13.94%	44.7	10.15%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-4	-9.750e+00	0.0002	559.0	56.87%	223.6	50.76%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e-4	-9.370e+00	0.0003	284.0	28.89%	104.1	23.64%
STAT6/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-4	-9.276e+00	0.0003	88.0	8.95%	26.2	5.95%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-9.106e+00	0.0004	10.0	1.02%	1.3	0.29%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-3	-8.613e+00	0.0006	56.0	5.70%	15.2	3.45%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e-3	-8.513e+00	0.0007	105.0	10.68%	33.6	7.63%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e-3	-8.494e+00	0.0007	18.0	1.83%	3.4	0.77%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e-3	-8.490e+00	0.0007	414.0	42.12%	161.3	36.63%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-3	-8.395e+00	0.0007	25.0	2.54%	5.9	1.35%
PAX3:FKHR-fusion(Paired/Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e-3	-7.963e+00	0.0011	31.0	3.15%	7.8	1.78%
n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-7.949e+00	0.0011	77.0	7.83%	23.2	5.27%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e-3	-7.911e+00	0.0012	85.0	8.65%	26.5	6.02%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.874e+00	0.0012	152.0	15.46%	52.5	11.92%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-7.825e+00	0.0012	43.0	4.37%	11.3	2.58%
E2F(E2F)/Cell-Cycle-Exp/Homer	TTSGCGCGAAAA	1e-3	-7.576e+00	0.0016	9.0	0.92%	0.0	0.00%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-3	-7.567e+00	0.0016	113.0	11.50%	37.7	8.56%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-3	-7.550e+00	0.0016	146.0	14.85%	50.6	11.50%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-3	-7.468e+00	0.0017	17.0	1.73%	3.4	0.78%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.443e+00	0.0017	265.0	26.96%	99.1	22.50%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-3	-7.316e+00	0.0019	120.0	12.21%	40.3	9.14%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e-3	-7.276e+00	0.0020	197.0	20.04%	71.2	16.17%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e-3	-7.181e+00	0.0021	33.0	3.36%	8.6	1.96%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-6.579e+00	0.0038	100.0	10.17%	33.4	7.58%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e-2	-6.523e+00	0.0040	32.0	3.26%	8.8	1.99%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e-2	-6.360e+00	0.0047	76.0	7.73%	24.3	5.51%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-2	-6.335e+00	0.0047	179.0	18.21%	65.9	14.96%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-2	-6.247e+00	0.0051	57.0	5.80%	17.2	3.91%
Pax7-longest(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-2	-6.147e+00	0.0055	8.0	0.81%	1.3	0.29%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-2	-6.147e+00	0.0055	8.0	0.81%	1.8	0.42%
TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-2	-6.147e+00	0.0055	8.0	0.81%	1.3	0.30%
ISRE(IRF)/ThioMac-LPS-exp(GSE23622)/HOMER	AGTTTCASTTTC	1e-2	-6.114e+00	0.0056	12.0	1.22%	2.8	0.65%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-2	-6.069e+00	0.0058	70.0	7.12%	22.7	5.15%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.059e+00	0.0058	156.0	15.87%	56.9	12.91%
NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e-2	-5.897e+00	0.0068	25.0	2.54%	6.5	1.48%
NRF1/Promoter/Homer	STGCGCATGCGC	1e-2	-5.877e+00	0.0068	28.0	2.85%	7.3	1.66%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-2	-5.765e+00	0.0076	172.0	17.50%	63.6	14.44%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-2	-5.455e+00	0.0102	84.0	8.55%	28.4	6.45%
NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.387e+00	0.0108	94.0	9.56%	32.3	7.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.347e+00	0.0112	18.0	1.83%	4.9	1.11%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-2	-5.254e+00	0.0121	170.0	17.29%	63.5	14.41%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-2	-5.252e+00	0.0121	225.0	22.89%	86.6	19.66%
SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-5.155e+00	0.0131	507.0	51.58%	209.7	47.60%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-2	-5.122e+00	0.0135	518.0	52.70%	214.8	48.75%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-2	-5.110e+00	0.0135	83.0	8.44%	28.7	6.52%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e-2	-4.962e+00	0.0155	266.0	27.06%	104.3	23.67%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.925e+00	0.0160	35.0	3.56%	10.9	2.46%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-2	-4.839e+00	0.0172	249.0	25.33%	97.2	22.06%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-2	-4.829e+00	0.0173	7.0	0.71%	0.0	0.00%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e-2	-4.812e+00	0.0174	321.0	32.66%	128.8	29.24%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-2	-4.810e+00	0.0174	43.0	4.37%	13.8	3.13%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e-2	-4.769e+00	0.0178	168.0	17.09%	63.7	14.47%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-2	-4.749e+00	0.0181	102.0	10.38%	36.2	8.22%
MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e-2	-4.741e+00	0.0181	151.0	15.36%	56.6	12.84%
c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer	VCCACGTG	1e-2	-4.682e+00	0.0190	56.0	5.70%	18.5	4.19%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-4.592e+00	0.0206	23.0	2.34%	6.7	1.52%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-4.534e+00	0.0216	53.0	5.39%	17.5	3.97%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-4.455e+00	0.0232	289.0	29.40%	115.2	26.16%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-4.327e+00	0.0262	103.0	10.48%	37.8	8.59%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.034e+00	0.0348	148.0	15.06%	56.3	12.79%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.997e+00	0.0359	22.0	2.24%	6.2	1.40%
Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-1	-3.848e+00	0.0413	46.0	4.68%	15.2	3.44%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-1	-3.777e+00	0.0440	154.0	15.67%	59.4	13.49%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.720e+00	0.0462	137.0	13.94%	52.1	11.82%
LXRE(NR/DR4)/BLRP(RAW)-LXRb-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e-1	-3.634e+00	0.0492	6.0	0.61%	1.4	0.32%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.634e+00	0.0492	6.0	0.61%	1.8	0.41%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.634e+00	0.0492	6.0	0.61%	1.8	0.41%
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-3.561e+00	0.0526	24.0	2.44%	7.4	1.69%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.255e+00	0.0709	67.0	6.82%	24.4	5.54%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-3.207e+00	0.0737	12.0	1.22%	3.0	0.69%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e-1	-3.085e+00	0.0827	31.0	3.15%	10.4	2.37%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e-1	-3.084e+00	0.0827	267.0	27.16%	109.6	24.88%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e-1	-3.070e+00	0.0828	23.0	2.34%	7.7	1.76%
Ptf1a(HLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e-1	-2.936e+00	0.0939	321.0	32.66%	133.3	30.27%
Pax8(Paired/Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e-1	-2.929e+00	0.0940	20.0	2.03%	6.9	1.56%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-1	-2.916e+00	0.0944	78.0	7.93%	29.0	6.59%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.915e+00	0.0944	126.0	12.82%	49.7	11.28%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e-1	-2.863e+00	0.0983	224.0	22.79%	91.8	20.83%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-2.792e+00	0.1047	123.0	12.51%	48.9	11.10%
GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e-1	-2.791e+00	0.1047	17.0	1.73%	5.8	1.32%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e-1	-2.662e+00	0.1176	14.0	1.42%	4.9	1.12%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-1	-2.636e+00	0.1199	45.0	4.58%	16.7	3.79%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-1	-2.577e+00	0.1263	5.0	0.51%	1.0	0.22%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e-1	-2.550e+00	0.1289	117.0	11.90%	46.6	10.59%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-1	-2.533e+00	0.1303	27.0	2.75%	9.0	2.05%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e-1	-2.490e+00	0.1351	81.0	8.24%	31.5	7.15%
GATA:SCL/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-1	-2.483e+00	0.1352	8.0	0.81%	2.8	0.64%
E2A(HLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e-1	-2.452e+00	0.1385	154.0	15.67%	63.0	14.29%
TRa(NR)/C17.2-TRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.331e+00	0.1553	29.0	2.95%	10.2	2.32%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-2.314e+00	0.1570	73.0	7.43%	28.0	6.36%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.304e+00	0.1575	118.0	12.00%	47.6	10.79%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.290e+00	0.1586	139.0	14.14%	56.2	12.77%
RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-2.227e+00	0.1680	94.0	9.56%	37.4	8.48%
PRDM1/BMI1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-2.182e+00	0.1745	70.0	7.12%	27.3	6.20%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-2.160e+00	0.1774	31.0	3.15%	11.6	2.63%
Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.132e+00	0.1813	13.0	1.32%	5.0	1.13%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.105e+00	0.1851	48.0	4.88%	18.9	4.28%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-2.046e+00	0.1951	209.0	21.26%	87.8	19.94%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.038e+00	0.1955	38.0	3.87%	14.4	3.26%
GATA-IR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.967e+00	0.2086	10.0	1.02%	3.5	0.80%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.836e+00	0.2364	237.0	24.11%	100.5	22.81%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.757e+00	0.2543	82.0	8.34%	33.6	7.62%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.728e+00	0.2601	32.0	3.26%	12.0	2.73%
T1ISRE(IRF)/Ifnb-Exp/Homer	ACTTTCGTTTCT	1e0	-1.675e+00	0.2725	4.0	0.41%	0.8	0.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.657e+00	0.2759	107.0	10.89%	44.2	10.04%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.643e+00	0.2781	86.0	8.75%	35.4	8.04%
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.642e+00	0.2781	17.0	1.73%	6.3	1.42%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.559e+00	0.2991	239.0	24.31%	102.6	23.30%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-1.531e+00	0.3059	69.0	7.02%	29.0	6.57%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.474e+00	0.3219	220.0	22.38%	94.0	21.34%
GATA-DR8(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.459e+00	0.3231	9.0	0.92%	3.1	0.70%
Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.459e+00	0.3231	9.0	0.92%	3.6	0.83%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.423e+00	0.3330	45.0	4.58%	18.9	4.29%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-1.412e+00	0.3348	26.0	2.64%	10.9	2.47%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.362e+00	0.3500	40.0	4.07%	16.9	3.83%
HIF2a(HLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.355e+00	0.3506	54.0	5.49%	22.6	5.12%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.318e+00	0.3620	116.0	11.80%	49.3	11.19%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.302e+00	0.3655	141.0	14.34%	60.7	13.77%
Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.239e+00	0.3873	81.0	8.24%	34.3	7.78%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.196e+00	0.4021	99.0	10.07%	42.5	9.64%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.184e+00	0.4049	53.0	5.39%	22.6	5.14%
OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.160e+00	0.4124	32.0	3.26%	13.8	3.14%
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.068e+00	0.4499	184.0	18.72%	80.9	18.37%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.035e+00	0.4622	84.0	8.55%	36.1	8.20%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.605e-01	0.4955	221.0	22.48%	97.0	22.03%
GFY-Staf/Promoters/Homer	RACTACAATTCCCAGAAKGC	1e0	-9.507e-01	0.4978	3.0	0.31%	0.0	0.00%
PAX5(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.422e-01	0.4994	24.0	2.44%	10.7	2.43%
VDR(NR/DR3)/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-9.059e-01	0.5152	10.0	1.02%	4.3	0.98%
FXR(NR/IR1)/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.342e-01	0.5506	28.0	2.85%	12.7	2.89%
Pax7-long(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-7.721e-01	0.5829	5.0	0.51%	2.5	0.56%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-7.466e-01	0.5949	162.0	16.48%	72.1	16.38%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.944e-01	0.6236	311.0	31.64%	139.1	31.58%
GRE(NR/IR3)/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.824e-01	0.6280	7.0	0.71%	3.3	0.75%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.562e-01	0.6414	154.0	15.67%	69.3	15.74%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.424e-01	0.6470	78.0	7.93%	35.2	7.99%
ETS:E-box/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.227e-01	0.6566	9.0	0.92%	4.4	0.99%
ERE(NR/IR3)/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.829e-01	0.6799	22.0	2.24%	10.8	2.46%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-5.082e-01	0.7290	83.0	8.44%	38.5	8.75%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-4.797e-01	0.7464	65.0	6.61%	30.4	6.90%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.636e-01	0.7549	32.0	3.26%	15.4	3.49%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-4.448e-01	0.7654	208.0	21.16%	95.8	21.74%
GLI3(Zf)/GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.264e-01	0.7759	4.0	0.41%	2.0	0.46%
CTCF-SatelliteElement/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.247e-01	0.7759	2.0	0.20%	0.4	0.09%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-4.247e-01	0.7759	2.0	0.20%	0.0	0.00%
HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-4.131e-01	0.7759	38.0	3.87%	18.8	4.26%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-3.871e-01	0.7842	10.0	1.02%	5.6	1.28%
GATA-DR4(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-3.871e-01	0.7842	10.0	1.02%	5.7	1.30%
PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.871e-01	0.7842	10.0	1.02%	5.6	1.27%
Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-3.490e-01	0.8108	16.0	1.63%	8.5	1.93%
Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-3.085e-01	0.8404	41.0	4.17%	20.7	4.70%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-2.844e-01	0.8569	101.0	10.27%	48.6	11.03%
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.620e-01	0.8723	81.0	8.24%	39.6	9.00%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-2.410e-01	0.8868	15.0	1.53%	8.8	2.00%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.958e-01	0.9235	203.0	20.65%	96.9	22.00%
Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.612e-01	0.9517	20.0	2.03%	11.4	2.60%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.130e-01	0.9942	1.0	0.10%	0.4	0.08%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-8.505e-02	1.0000	67.0	6.82%	36.0	8.16%
CHR/Cell-Cycle-Exp/Homer	SRGTTTCAAA	1e0	-8.472e-02	1.0000	90.0	9.16%	46.7	10.60%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-8.469e-02	1.0000	9.0	0.92%	6.2	1.41%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-7.866e-02	1.0000	28.0	2.85%	16.5	3.74%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.750e-02	1.0000	16.0	1.63%	10.9	2.46%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.871e-02	1.0000	343.0	34.89%	164.2	37.27%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-5.813e-02	1.0000	12.0	1.22%	8.6	1.96%
Mouse_Recombination_Hotspot/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.802e-02	1.0000	5.0	0.51%	4.7	1.08%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-5.392e-02	1.0000	27.0	2.75%	16.0	3.64%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-4.386e-02	1.0000	17.0	1.73%	11.3	2.56%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-3.437e-02	1.0000	24.0	2.44%	15.9	3.60%
FOXA1:AR/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.169e-02	1.0000	11.0	1.12%	8.7	1.97%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.181e-02	1.0000	20.0	2.03%	14.8	3.36%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.142e-02	1.0000	1.0	0.10%	2.2	0.51%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-7.954e-03	1.0000	6.0	0.61%	6.5	1.46%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-6.414e-03	1.0000	3.0	0.31%	4.7	1.06%
Oct4:Sox17/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-4.638e-03	1.0000	15.0	1.53%	12.5	2.85%
RBPJ:Ebox/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.650e-03	1.0000	21.0	2.14%	16.0	3.64%
NFkB-p50,p52(RHD)/p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-2.240e-03	1.0000	14.0	1.42%	12.6	2.87%
ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-7.850e-04	1.0000	177.0	18.01%	97.7	22.18%
Reverb(NR/DR2)/BLRP(RAW)-Reverba-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.610e-04	1.0000	8.0	0.81%	9.0	2.04%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-4.920e-04	1.0000	5.0	0.51%	7.0	1.59%
E2A-nearPU.1(HLH)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-0.000e+00	1.0000	84.0	8.55%	67.2	15.25%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	0.0	0.00%