Information for motif2


Reverse Opposite:

p-value:1e-432
log p-value:-9.966e+02
Information Content per bp:1.357
Number of Target Sequences with motif276.0
Percentage of Target Sequences with motif12.31%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets142.0 +/- 80.4bp
Average Position of motif in Background188.6 +/- 53.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0597.1_THAP1/Jaspar

Match Rank:1
Score:0.62
Offset:1
Orientation:forward strand
Alignment:NNGGCCCGNN
-CTGCCCGCA

Sp1(Zf)/Promoter/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:NNGGCCCGNN---
-GGCCCCGCCCCC

POL011.1_XCPE1/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:NNGGCCCGNN-
-GGTCCCGCCC

MA0516.1_SP2/Jaspar

Match Rank:4
Score:0.61
Offset:2
Orientation:forward strand
Alignment:NNGGCCCGNN-------
--GCCCCGCCCCCTCCC

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-NNGGCCCGNN-----
TCGTACCCGCATCATT

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-NNGGCCCGNN------
TACGCCCCGCCACTCTG

POL006.1_BREu/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:NNGGCCCGNN
--GGCGCGCT

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:8
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:NNGGCCCGNN
--BGCACGTA

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:9
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:NNGGCCCGNN-
---GCACGTNC

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---NNGGCCCGNN---
NNNNTGACCCGGCGCG