Information for motif5


Reverse Opposite:

p-value:1e-337
log p-value:-7.763e+02
Information Content per bp:1.889
Number of Target Sequences with motif322.0
Percentage of Target Sequences with motif14.36%
Number of Background Sequences with motif4.6
Percentage of Background Sequences with motif0.62%
Average Position of motif in Targets161.9 +/- 77.5bp
Average Position of motif in Background114.4 +/- 69.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.75
Offset:4
Orientation:reverse strand
Alignment:GCCCCGGAGC
----CGGAGC

MA0524.1_TFAP2C/Jaspar

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCCCGGAGC----
TGCCCTGGGGCNANN

POL011.1_XCPE1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCCCCGGAGC
GGGCGGGACC

MA0003.2_TFAP2A/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCCCCGGAGC----
TGCCCTGAGGCANTN

PB0086.1_Tcfap2b_1/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GCCCCGGAGC--
TTGCCCTAGGGCAT

PB0191.1_Tcfap2c_2/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCCCCGGAGC--
CCGCCCAAGGGCAG

PB0153.1_Nr2f2_2/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GCCCCGGAGC-
NNNNTGACCCGGCGCG

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GCCCCGGAGC
ATGCCCTGAGGC

MA0506.1_NRF1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GCCCCGGAGC
TGCGCAGGCGC

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--GCCCCGGAGC--
NTGCCCANNGGTNA