Information for motif9


Reverse Opposite:

p-value:1e-187
log p-value:-4.327e+02
Information Content per bp:1.456
Number of Target Sequences with motif3960.0
Percentage of Target Sequences with motif8.72%
Number of Background Sequences with motif2417.3
Percentage of Background Sequences with motif5.36%
Average Position of motif in Targets101.4 +/- 54.5bp
Average Position of motif in Background92.4 +/- 58.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:forward strand
Alignment:CAGCCAATTA-
-AGCCAATCGG

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATTA
ACTAGCCAATCA

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CAGCCAATTA
-TGCCAA---

PH0098.1_Lhx8/Jaspar

Match Rank:4
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAATTA-----
CACCGCTAATTAGNNGN

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAGCCAATTA
CAGCC-----

MA0502.1_NFYB/Jaspar

Match Rank:6
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CAGCCAATTA-
AAATGGACCAATCAG

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CAGCCAATTA-
NCTGTCAATCAN

PH0074.1_Hoxd1/Jaspar

Match Rank:8
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCAATTA-----
NNNAGCTAATTAGCTTA

PH0005.1_Barhl1/Jaspar

Match Rank:9
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATTA----
AACAACCAATTAATTC

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CAGCCAATTA-----
CACCGCTAATTAGCGGT