Information for motif6


Reverse Opposite:

p-value:1e-382
log p-value:-8.796e+02
Information Content per bp:1.663
Number of Target Sequences with motif9135.0
Percentage of Target Sequences with motif20.12%
Number of Background Sequences with motif5889.2
Percentage of Background Sequences with motif13.06%
Average Position of motif in Targets99.0 +/- 54.3bp
Average Position of motif in Background100.4 +/- 59.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:1
Score:0.95
Offset:2
Orientation:reverse strand
Alignment:NNAACAAWGG
--RACAAWGG

MA0143.3_Sox2/Jaspar

Match Rank:2
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:NNAACAAWGG
--AACAAAGG

MA0515.1_Sox6/Jaspar

Match Rank:3
Score:0.93
Offset:0
Orientation:reverse strand
Alignment:NNAACAAWGG
AAAACAATGG

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:NNAACAAWGG
RNAACAATGG

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---NNAACAAWGG----
ATAAGAACAAAGGACTA

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.92
Offset:1
Orientation:reverse strand
Alignment:NNAACAAWGG-
-GAACAATGGN

MA0442.1_SOX10/Jaspar

Match Rank:7
Score:0.92
Offset:3
Orientation:reverse strand
Alignment:NNAACAAWGG
---ACAAAG-

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---NNAACAAWGG----
AGAAGAACAAAGGACTA

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:NNAACAAWGG
AAAACAAAGG

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:NNAACAAWGG
-GAACAATGG