Information for motif1


Reverse Opposite:

p-value:1e-1181
log p-value:-2.722e+03
Information Content per bp:1.502
Number of Target Sequences with motif11314.0
Percentage of Target Sequences with motif24.92%
Number of Background Sequences with motif5524.1
Percentage of Background Sequences with motif12.25%
Average Position of motif in Targets99.3 +/- 53.1bp
Average Position of motif in Background98.0 +/- 60.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0005.1_Forkhead_class/Jaspar

Match Rank:1
Score:0.84
Offset:0
Orientation:forward strand
Alignment:TGWTTASHYW
TGTTTATTT-

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGWTTASHYW
TGTTTACTTT

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:3
Score:0.84
Offset:0
Orientation:reverse strand
Alignment:TGWTTASHYW
TGTTTACTTT

MA0148.3_FOXA1/Jaspar

Match Rank:4
Score:0.82
Offset:-4
Orientation:forward strand
Alignment:----TGWTTASHYW-
TCCATGTTTACTTTG

MA0593.1_FOXP2/Jaspar

Match Rank:5
Score:0.82
Offset:-2
Orientation:reverse strand
Alignment:--TGWTTASHYW
TNTGTTTACTT-

MA0047.2_Foxa2/Jaspar

Match Rank:6
Score:0.81
Offset:0
Orientation:forward strand
Alignment:TGWTTASHYW--
TGTTTACTTAGG

MA0031.1_FOXD1/Jaspar

Match Rank:7
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-TGWTTASHYW
ATGTTTAC---

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:8
Score:0.81
Offset:-3
Orientation:forward strand
Alignment:---TGWTTASHYW
NYYTGTTTACHN-

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:9
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TGWTTASHYW
CNTGTTTACATA

PB0015.1_Foxa2_1/Jaspar

Match Rank:10
Score:0.78
Offset:-5
Orientation:reverse strand
Alignment:-----TGWTTASHYW--
NNNTTTGTTTACTTTTN