Information for motif5


Reverse Opposite:

p-value:1e-502
log p-value:-1.157e+03
Information Content per bp:1.715
Number of Target Sequences with motif1666.0
Percentage of Target Sequences with motif3.67%
Number of Background Sequences with motif390.5
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets98.4 +/- 51.4bp
Average Position of motif in Background97.3 +/- 62.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer

Match Rank:1
Score:0.95
Offset:-1
Orientation:forward strand
Alignment:-GTTAATCATTAA
GGTTAAACATTAA

MA0153.1_HNF1B/Jaspar

Match Rank:2
Score:0.92
Offset:0
Orientation:reverse strand
Alignment:GTTAATCATTAA
GTTAAATATTAA

MA0046.1_HNF1A/Jaspar

Match Rank:3
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-GTTAATCATTAA-
GGTTAATAATTAAC

PH0051.1_Hoxa4/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---GTTAATCATTAA--
CNAGTTAATTAATAANN

MF0010.1_Homeobox_class/Jaspar

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GTTAATCATTAA
---AATTATT--

PH0018.1_Dbx1/Jaspar

Match Rank:6
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--GTTAATCATTAA---
TAATTAATTAATAATTA

PH0019.1_Dbx2/Jaspar

Match Rank:7
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:GTTAATCATTAA-----
-NAATTAATTAATTNNN

PH0059.1_Hoxb4/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTAATCATTAA--
CGCGTTAATTAATTACC

PH0070.1_Hoxc5/Jaspar

Match Rank:9
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GTTAATCATTAA--
CGAATTAATTAATTACT

PH0080.1_Hoxd8/Jaspar

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GTTAATCATTAA------
-TAAATAATTAATGGCTA