Information for motif12


Reverse Opposite:

p-value:1e-145
log p-value:-3.350e+02
Information Content per bp:1.832
Number of Target Sequences with motif1300.0
Percentage of Target Sequences with motif2.86%
Number of Background Sequences with motif579.6
Percentage of Background Sequences with motif1.29%
Average Position of motif in Targets98.9 +/- 52.1bp
Average Position of motif in Background96.7 +/- 56.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0017.1_NR2F1/Jaspar

Match Rank:1
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--GGYCAAAGKTCA
AGGTTCAAAGGTCA

MA0114.2_HNF4A/Jaspar

Match Rank:2
Score:0.93
Offset:-2
Orientation:reverse strand
Alignment:--GGYCAAAGKTCA-
NAGNNCAAAGTCCAN

MA0484.1_HNF4G/Jaspar

Match Rank:3
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---GGYCAAAGKTCA
AGAGTCCAAAGTCCA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----GGYCAAAGKTCA
CANAGNNCAAAGTCCA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:5
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--GGYCAAAGKTCA
GAGGTCAAAGGTCA

MA0115.1_NR1H2::RXRA/Jaspar

Match Rank:6
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GGYCAAAGKTCA--
AAAGGTCAAAGGTCAAC

RXR(NR/DR1)/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--GGYCAAAGKTCA
TAGGGCAAAGGTCA

PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--GGYCAAAGKTCA
TGGGGCAAAGGTCA

MA0065.2_PPARG::RXRA/Jaspar

Match Rank:9
Score:0.84
Offset:-3
Orientation:forward strand
Alignment:---GGYCAAAGKTCA
GTAGGGCAAAGGTCA

MA0512.1_Rxra/Jaspar

Match Rank:10
Score:0.84
Offset:3
Orientation:forward strand
Alignment:GGYCAAAGKTCA--
---CAAAGGTCAGA