Information for motif13


Reverse Opposite:

p-value:1e-131
log p-value:-3.025e+02
Information Content per bp:1.784
Number of Target Sequences with motif1211.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif548.0
Percentage of Background Sequences with motif1.22%
Average Position of motif in Targets103.4 +/- 55.3bp
Average Position of motif in Background95.8 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Oct4(POU/Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.92
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATVV
TTATGCAAAT--

MA0507.1_POU2F2/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:reverse strand
Alignment:--ATGCAAATVV-
ATATGCAAATNNN

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:3
Score:0.89
Offset:-2
Orientation:forward strand
Alignment:--ATGCAAATVV
ATATGCAAAT--

PH0145.1_Pou2f3/Jaspar

Match Rank:4
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATVV--
TTGTATGCAAATTAGA

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.89
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATVV--
TTGTATGCAAATTAGA

OCT4-SOX2-TCF-NANOG((POU/Homeobox/HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.77
Offset:-7
Orientation:reverse strand
Alignment:-------ATGCAAATVV
CATTGTTATGCAAAT--

MA0142.1_Pou5f1::Sox2/Jaspar

Match Rank:7
Score:0.73
Offset:-7
Orientation:forward strand
Alignment:-------ATGCAAATVV
CTTTGTTATGCAAAT--

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----ATGCAAATVV
NATGTTGCAA----

MA0038.1_Gfi1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:forward strand
Alignment:ATGCAAATVV---
---CAAATCACTG

PB0145.1_Mafb_2/Jaspar

Match Rank:10
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------ATGCAAATVV
ANATTTTTGCAANTN-