Information for motif21


Reverse Opposite:

p-value:1e-9
log p-value:-2.125e+01
Information Content per bp:1.946
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets108.0 +/- 62.6bp
Average Position of motif in Background110.5 +/- 48.2bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GACGATCG
TGACGT---

MA0131.1_HINFP/Jaspar

Match Rank:2
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GACGATCG
GCGGACGTTN-

PB0108.1_Atf1_2/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----GACGATCG--
GAATGACGAATAAC

MA0078.1_Sox17/Jaspar

Match Rank:4
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GACGATCG-
GACAATGNN

PH0017.1_Cux1_2/Jaspar

Match Rank:5
Score:0.52
Offset:-4
Orientation:forward strand
Alignment:----GACGATCG---
TAATGATGATCACTA

HIF-1a(HLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.52
Offset:0
Orientation:forward strand
Alignment:GACGATCG
TACGTGCV

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:7
Score:0.52
Offset:2
Orientation:reverse strand
Alignment:GACGATCG----
--DGATCRATAN

MA0077.1_SOX9/Jaspar

Match Rank:8
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GACGATCG
GAACAATGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---GACGATCG
CCAGACRSVB-

PH0044.1_Homez/Jaspar

Match Rank:10
Score:0.50
Offset:-6
Orientation:reverse strand
Alignment:------GACGATCG---
NNTAAAAACGATGTTNT