Information for motif4


Reverse Opposite:

p-value:1e-197
log p-value:-4.543e+02
Information Content per bp:1.796
Number of Target Sequences with motif4239.0
Percentage of Target Sequences with motif25.29%
Number of Background Sequences with motif5351.0
Percentage of Background Sequences with motif16.20%
Average Position of motif in Targets101.8 +/- 54.5bp
Average Position of motif in Background101.2 +/- 62.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCTAATTA
NCTAATTA

PB0031.1_Hoxa3_1/Jaspar

Match Rank:2
Score:0.91
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTA--
TGGAGGTAATTAAC

PH0036.1_Gsx2/Jaspar

Match Rank:3
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTA----
NTNNGCTAATTANCNT

PH0131.1_Pax4/Jaspar

Match Rank:4
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTA-----
NNGNGCTAATTAGNTNA

PH0032.1_Evx2/Jaspar

Match Rank:5
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTA-----
CACCGCTAATTAGCGGT

PH0097.1_Lhx6_2/Jaspar

Match Rank:6
Score:0.90
Offset:-4
Orientation:reverse strand
Alignment:----GCTAATTA-----
NNNCGCTAATTAGNNGA

PH0045.1_Hoxa1/Jaspar

Match Rank:7
Score:0.90
Offset:-4
Orientation:forward strand
Alignment:----GCTAATTA----
CTGAGCTAATTACCGT

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.90
Offset:1
Orientation:reverse strand
Alignment:GCTAATTA---
-YTAATTAVHT

PH0050.1_Hoxa3/Jaspar

Match Rank:9
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:GCTAATTA------
ACTAATTANCNCNA

PH0155.1_Prrx2/Jaspar

Match Rank:10
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---GCTAATTA------
AAAGCTAATTAGCGAAA