Information for motif23


Reverse Opposite:

p-value:1e-5
log p-value:-1.208e+01
Information Content per bp:1.917
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets82.6 +/- 60.9bp
Average Position of motif in Background152.7 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529/Homer

Match Rank:1
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCKTARATAG
CCAAAAATAG

MF0008.1_MADS_class/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:CCKTARATAG
CCATATATGG

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CCKTARATAG-
DCYAAAAATAGM

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCKTARATAG--
CCTTTTATAGNC

MA0052.2_MEF2A/Jaspar

Match Rank:5
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CCKTARATAG---
AGCTAAAAATAGCAT

MA0497.1_MEF2C/Jaspar

Match Rank:6
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CCKTARATAG--
ATGCTAAAAATAGAA

CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCKTARATAG--
CCATATATGGNA

PB0078.1_Srf_1/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCKTARATAG--
TTCCATATATGGAA

PH0175.1_Vax2/Jaspar

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CCKTARATAG-----
GNCTTAATTAGTGNNN

MA0083.2_SRF/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCKTARATAG-----
TTNCCTTATTTGGNCATN