Information for motif17


Reverse Opposite:

p-value:1e-14
log p-value:-3.445e+01
Information Content per bp:1.925
Number of Target Sequences with motif374.0
Percentage of Target Sequences with motif2.23%
Number of Background Sequences with motif476.5
Percentage of Background Sequences with motif1.44%
Average Position of motif in Targets97.3 +/- 55.8bp
Average Position of motif in Background95.1 +/- 58.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0134.1_Hnf4a_2/Jaspar

Match Rank:1
Score:0.82
Offset:-3
Orientation:forward strand
Alignment:---CAAAGTCC-----
GGCAAAAGTCCAATAA

MA0114.2_HNF4A/Jaspar

Match Rank:2
Score:0.81
Offset:-5
Orientation:reverse strand
Alignment:-----CAAAGTCC--
NAGNNCAAAGTCCAN

MA0484.1_HNF4G/Jaspar

Match Rank:3
Score:0.80
Offset:-6
Orientation:forward strand
Alignment:------CAAAGTCC-
AGAGTCCAAAGTCCA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:4
Score:0.79
Offset:-7
Orientation:forward strand
Alignment:-------CAAAGTCC-
CANAGNNCAAAGTCCA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CAAAGTCC---
-GCATTCCAGN

MA0105.3_NFKB1/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CAAAGTCC-
GGGAAATTCCC

MA0131.1_HINFP/Jaspar

Match Rank:7
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CAAAGTCC--
TAACGTCCGC

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CAAAGTCC---
-RCATTCCWGG

MA0107.1_RELA/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CAAAGTCC-
GGAAATTCCC

NFkB-p65-Rel(RHD)/LPS-exp(GSE23622)/Homer

Match Rank:10
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CAAAGTCC-
GGAAATTCCC