Information for motif6


Reverse Opposite:

p-value:1e-161
log p-value:-3.711e+02
Information Content per bp:1.653
Number of Target Sequences with motif1715.0
Percentage of Target Sequences with motif10.23%
Number of Background Sequences with motif1667.1
Percentage of Background Sequences with motif5.05%
Average Position of motif in Targets99.0 +/- 52.7bp
Average Position of motif in Background99.6 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.97
Offset:0
Orientation:reverse strand
Alignment:YYCCCTGCTGDG
CCCCCTGCTGTG

PB0206.1_Zic2_2/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:YYCCCTGCTGDG---
TCNCCTGCTGNGNNN

PB0205.1_Zic1_2/Jaspar

Match Rank:3
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:YYCCCTGCTGDG---
TNTCCTGCTGTGNNG

PB0207.1_Zic3_2/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:YYCCCTGCTGDG---
NNTCCTGCTGTGNNN

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:5
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:YYCCCTGCTGDG-
---HCAGCTGDTN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:6
Score:0.74
Offset:2
Orientation:forward strand
Alignment:YYCCCTGCTGDG
--ANCAGCTG--

MA0461.1_Atoh1/Jaspar

Match Rank:7
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:YYCCCTGCTGDG
--GCCATCTG--

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:YYCCCTGCTGDG
-CAGCAGCTGN-

MyoG(HLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.71
Offset:4
Orientation:reverse strand
Alignment:YYCCCTGCTGDG
----CAGCTGTT

MA0500.1_Myog/Jaspar

Match Rank:10
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:YYCCCTGCTGDG
-NNGCAGCTGTC