Information for motif7


Reverse Opposite:

p-value:1e-142
log p-value:-3.279e+02
Information Content per bp:1.818
Number of Target Sequences with motif4825.0
Percentage of Target Sequences with motif28.79%
Number of Background Sequences with motif6772.5
Percentage of Background Sequences with motif20.50%
Average Position of motif in Targets99.5 +/- 54.8bp
Average Position of motif in Background98.9 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0143.3_Sox2/Jaspar

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT
CCTTTGTT

MA0514.1_Sox3/Jaspar

Match Rank:2
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT--
CCTTTGTTTT

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTT-----
TNNTCCTTTGTTCTNNT

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:4
Score:0.93
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT
CCWTTGTY

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.93
Offset:-4
Orientation:reverse strand
Alignment:----CCTTTGTT-----
NNNTCCTTTGTTCTNNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-CCTTTGTT-
NCCATTGTTC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT--
CCATTGTTNY

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.86
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT--
CCATTGTTTT

MA0442.1_SOX10/Jaspar

Match Rank:9
Score:0.85
Offset:1
Orientation:forward strand
Alignment:CCTTTGTT
-CTTTGT-

MA0077.1_SOX9/Jaspar

Match Rank:10
Score:0.80
Offset:0
Orientation:forward strand
Alignment:CCTTTGTT-
CCATTGTTC