Information for motif17


Reverse Opposite:

p-value:1e-24
log p-value:-5.747e+01
Information Content per bp:1.530
Number of Target Sequences with motif48.0
Percentage of Target Sequences with motif11.88%
Number of Background Sequences with motif5.6
Percentage of Background Sequences with motif1.88%
Average Position of motif in Targets892.2 +/- 713.2bp
Average Position of motif in Background1523.9 +/- 372.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0008.1_E2F2_1/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CGAGCGCCTC---
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:2
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CGAGCGCCTC---
ANCGCGCGCCCTTNN

POL006.1_BREu/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGAGCGCCTC
AGCGCGCC--

PB0095.1_Zfp161_1/Jaspar

Match Rank:4
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CGAGCGCCTC-
NCANGCGCGCGCGCCA

PB0052.1_Plagl1_1/Jaspar

Match Rank:5
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CGAGCGCCTC---
TTGGGGGCGCCCCTAG

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CGAGCGCCTC
-CAGCC----

POL001.1_MTE/Jaspar

Match Rank:7
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---CGAGCGCCTC------
TTTCGAGCGGAACGGTCGC

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--CGAGCGCCTC
CTTGAGTGGCT-

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGAGCGCCTC
TTGAGTGSTT-

POL013.1_MED-1/Jaspar

Match Rank:10
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CGAGCGCCTC
CGGAGC-----