Information for motif18


Reverse Opposite:

p-value:1e-24
log p-value:-5.569e+01
Information Content per bp:1.964
Number of Target Sequences with motif51.0
Percentage of Target Sequences with motif12.62%
Number of Background Sequences with motif6.1
Percentage of Background Sequences with motif2.06%
Average Position of motif in Targets1014.4 +/- 1251.3bp
Average Position of motif in Background389.9 +/- 291.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGACCGGG------
NNNACCGAGAGTNNN

MA0146.2_Zfx/Jaspar

Match Rank:2
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AGACCGGG-----
CAGGCCNNGGCCNN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGACCGGG
CCAGACAG--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AGACCGGG
CCAGACRSVB

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---AGACCGGG---
ACATGCCCGGGCAT

PB0020.1_Gabpa_1/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AGACCGGG-------
CAATACCGGAAGTGTAA

PB0138.1_Irf4_2/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-AGACCGGG------
GNNACCGAGAATNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGACCGGG----
NNNNTGACCCGGCGCG

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGACCGGG
AGGCCTNG

PB0200.1_Zfp187_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----AGACCGGG----
NNAGGGACAAGGGCNC