Information for motif2


Reverse Opposite:

p-value:1e-90
log p-value:-2.081e+02
Information Content per bp:1.530
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif16.83%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets685.2 +/- 545.6bp
Average Position of motif in Background2512.9 +/- 1069.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGAGCGGGC----
TGCGGAGTGGGACTGG

PB0076.1_Sp4_1/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGAGCGGGC------
NNNAAGGGGGCGGGNNN

PB0140.1_Irf6_2/Jaspar

Match Rank:3
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----CCGAGCGGGC-
NNNACCGAGAGTNNN

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CCGAGCGGGC
CGGAGC----

MA0597.1_THAP1/Jaspar

Match Rank:5
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CCGAGCGGGC--
---TNNGGGCAG

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CCGAGCGGGC--
CCACACAGCAGGAGA

PB0010.1_Egr1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CCGAGCGGGC---
ANTGCGGGGGCGGN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGAGCGGGC
--CAGCC---

MA0470.1_E2F4/Jaspar

Match Rank:9
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGAGCGGGC---
--GGGCGGGAAGG

MA0471.1_E2F6/Jaspar

Match Rank:10
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CCGAGCGGGC---
--GGGCGGGAAGG