Information for motif23


Reverse Opposite:

p-value:1e-22
log p-value:-5.082e+01
Information Content per bp:1.530
Number of Target Sequences with motif73.0
Percentage of Target Sequences with motif18.07%
Number of Background Sequences with motif14.4
Percentage of Background Sequences with motif4.85%
Average Position of motif in Targets824.5 +/- 735.8bp
Average Position of motif in Background1269.3 +/- 1000.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)2.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCGTCGCGGCC--
GGGGCCGAGGCCTG

ZNF711(Zf)/SH-SY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.52
Offset:5
Orientation:reverse strand
Alignment:GCCGTCGCGGCC-
-----CTAGGCCT

MA0024.2_E2F1/Jaspar

Match Rank:3
Score:0.51
Offset:2
Orientation:reverse strand
Alignment:GCCGTCGCGGCC-
--CCTCCCGCCCN

PB0179.1_Sp100_2/Jaspar

Match Rank:4
Score:0.50
Offset:0
Orientation:forward strand
Alignment:GCCGTCGCGGCC---
TCCGTCGCTTAAAAG

MA0067.1_Pax2/Jaspar

Match Rank:5
Score:0.50
Offset:2
Orientation:forward strand
Alignment:GCCGTCGCGGCC
--AGTCACGC--

POL011.1_XCPE1/Jaspar

Match Rank:6
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GCCGTCGCGGCC
--GGTCCCGCCC

CRE(bZIP)/Promoter/Homer

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGCGGCC
GTGACGTCACCG--

PB0131.1_Gmeb1_2/Jaspar

Match Rank:8
Score:0.48
Offset:-5
Orientation:reverse strand
Alignment:-----GCCGTCGCGGCC
TNAACGACGTCGNCCA-

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:9
Score:0.48
Offset:-2
Orientation:reverse strand
Alignment:--GCCGTCGCGGCC
TTGCCATGGCAACN

PB0140.1_Irf6_2/Jaspar

Match Rank:10
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-GCCGTCGCGGCC--
ACCACTCTCGGTCAC