Information for motif28


Reverse Opposite:

p-value:1e-18
log p-value:-4.352e+01
Information Content per bp:1.865
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif5.45%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.49%
Average Position of motif in Targets191.0 +/- 361.6bp
Average Position of motif in Background845.4 +/- 448.7bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)6.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0080.3_Spi1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGGCAGA--
AAAAAGAGGAAGTGA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGGCAGA
AGGTGNCAGACAG-

MA0081.1_SPIB/Jaspar

Match Rank:3
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGAGAGGCAGA
---AGAGGAA--

MA0474.1_Erg/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGAGAGGCAGA--
---ACAGGAAGTGG

PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GAGAGAGGCAGA-
---AGAGGAAGTG

MA0098.2_Ets1/Jaspar

Match Rank:6
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGGCAGA---
NNNACAGGAAGTGGN

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GAGAGAGGCAGA--
--AGGTGHCAGACA

MA0599.1_KLF5/Jaspar

Match Rank:8
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGAGAGGCAGA
GGGGNGGGGC---

MA0598.1_EHF/Jaspar

Match Rank:9
Score:0.53
Offset:4
Orientation:reverse strand
Alignment:GAGAGAGGCAGA
----CAGGAAGG

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:7
Orientation:reverse strand
Alignment:GAGAGAGGCAGA-----
-------CCAGACRSVB