Information for motif29


Reverse Opposite:

p-value:1e-18
log p-value:-4.319e+01
Information Content per bp:1.530
Number of Target Sequences with motif37.0
Percentage of Target Sequences with motif9.16%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif1.40%
Average Position of motif in Targets970.7 +/- 1096.1bp
Average Position of motif in Background2015.9 +/- 1469.0bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0117.1_Nkx3-1/Jaspar

Match Rank:1
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AAATACTAAAAT-
TACTAAGTACTTAAATG

PB0148.1_Mtf1_2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAATACTAAAAT--
AAATAAGAAAAAAC

PH0116.1_Nkx2-9/Jaspar

Match Rank:3
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----AAATACTAAAAT-
TTTTAAGTACTTAAATT

PH0075.1_Hoxd10/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAATACTAAAAT----
AATGCAATAAAATTTAT

MA0124.1_NKX3-1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AAATACTAAAAT
--ATACTTA---

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-AAATACTAAAAT---
TAGGTAATAAAATTCA

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AAATACTAAAAT-
CATACAATACGAAATAA

PB0079.1_Sry_1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAATACTAAAAT----
NANTATTATAATTNNN

PH0078.1_Hoxd13/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAATACTAAAAT---
CTACCAATAAAATTCT

PH0057.1_Hoxb13/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AAATACTAAAAT---
AACCCAATAAAATTCG