Information for motif8


Reverse Opposite:

p-value:1e-38
log p-value:-8.900e+01
Information Content per bp:1.530
Number of Target Sequences with motif45.0
Percentage of Target Sequences with motif11.14%
Number of Background Sequences with motif2.7
Percentage of Background Sequences with motif0.90%
Average Position of motif in Targets1203.9 +/- 1560.3bp
Average Position of motif in Background802.2 +/- 673.1bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.72
Offset:3
Orientation:forward strand
Alignment:CGGGGCCAATGG-
---AGCCAATCGG

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGGGGCCAATGG-
CTCCAGGGGTCAATTGA

MA0163.1_PLAG1/Jaspar

Match Rank:3
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CGGGGCCAATGG---
-GGGGCCCAAGGGGG

PB0112.1_E2F2_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CGGGGCCAATGG-
CCTTCGGCGCCAAAAGG

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGGGGCCAATGG
ACTAGCCAATCA

PB0113.1_E2F3_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGGGGCCAATGG-
AGCTCGGCGCCAAAAGC

MA0161.1_NFIC/Jaspar

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CGGGGCCAATGG
---TGCCAA---

MA0515.1_Sox6/Jaspar

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CGGGGCCAATGG
--AAAACAATGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CGGGGCCAATGG-
---GAACAATGGN

MA0502.1_NFYB/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--CGGGGCCAATGG-
AAATGGACCAATCAG