Information for motif1


Reverse Opposite:

p-value:1e-24
log p-value:-5.547e+01
Information Content per bp:1.604
Number of Target Sequences with motif22.0
Percentage of Target Sequences with motif7.94%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets153.5 +/- 67.3bp
Average Position of motif in Background22.1 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:1
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:AGCAAATTGAGT-
---TAATTGATTA

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAATTGAGT
NACAGGAAAT-----

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:3
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGCAAATTGAGT-
-GWAAYHTGABMC

MA0156.1_FEV/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCAAATTGAGT
CAGGAAAT-----

PB0177.1_Sox7_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCAAATTGAGT---------
GTGCTAATTGTGTGTGTACGCT

PB0041.1_Mafb_1/Jaspar

Match Rank:6
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------AGCAAATTGAGT
NCTANGTCAGCAAATTT---

MA0496.1_MAFK/Jaspar

Match Rank:7
Score:0.56
Offset:-7
Orientation:forward strand
Alignment:-------AGCAAATTGAGT
CTGAGTCAGCAATTT----

MA0507.1_POU2F2/Jaspar

Match Rank:8
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCAAATTGAGT
ATATGCAAATNNN--

Oct2(POU/Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---AGCAAATTGAGT
ATATGCAAAT-----

PB0068.1_Sox1_1/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGCAAATTGAGT----
AATCAATTCAATAATT