Information for motif11


Reverse Opposite:

p-value:1e-18
log p-value:-4.212e+01
Information Content per bp:1.668
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif6.50%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets159.3 +/- 80.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0007.2_AR/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CACTCAGTCCTT
GNACANNNTGTTCTT

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:2
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CACTCAGTCCTT
--TTAAGTGCTT

PH0112.1_Nkx2-3/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CACTCAGTCCTT----
CNTTAAGTACTTAANG

PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CACTCAGTCCTT
GVACAGNMTGTYCTB

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CACTCAGTCCTT
NCCACTTAN-----

PH0125.1_Obox5_2/Jaspar

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CACTCAGTCCTT---
GATAATTAATCCCTCTT

ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----CACTCAGTCCTT
AGNACAGNCTGTTCTN

MA0113.2_NR3C1/Jaspar

Match Rank:8
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----CACTCAGTCCTT
AGNACATTNTGTTCT-

NFAT:AP1/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--CACTCAGTCCTT------
NTGACTCANTTTTTCCANTN

GRE/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CACTCAGTCCTT
GRACAGWMTGTYCTB