Information for motif12


Reverse Opposite:

p-value:1e-18
log p-value:-4.149e+01
Information Content per bp:1.650
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif15.88%
Number of Background Sequences with motif11.4
Percentage of Background Sequences with motif3.21%
Average Position of motif in Targets140.9 +/- 91.3bp
Average Position of motif in Background147.5 +/- 90.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.69
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGCAATM
AAACAGACAAAGGAAT-

NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:2
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCCAAAGCAATM---
TGCCAAAATAAACANN

PB0083.1_Tcf7_1/Jaspar

Match Rank:3
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGCAATM
TATAGATCAAAGGAAAA

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGCAATM
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGCAATM
AGAAGAACAAAGGACTA

PB0082.1_Tcf3_1/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----GCCAAAGCAATM
TATAGATCAAAGGAAAA

PB0121.1_Foxj3_2/Jaspar

Match Rank:7
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GCCAAAGCAATM--
AACACCAAAACAAAGGA

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCCAAAGCAATM
RACAAWGG----

MA0081.1_SPIB/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCCAAAGCAATM
---AGAGGAA--

MA0514.1_Sox3/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GCCAAAGCAATM
AAAACAAAGG----