Information for motif15


Reverse Opposite:

p-value:1e-15
log p-value:-3.578e+01
Information Content per bp:1.658
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets178.8 +/- 90.2bp
Average Position of motif in Background226.6 +/- 12.1bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0442.1_SOX10/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:TTACAAAGCT
--ACAAAG--

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.65
Offset:5
Orientation:reverse strand
Alignment:TTACAAAGCT--
-----AAGCTTG

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:3
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TTACAAAGCT
-RACAAWGG-

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TTACAAAGCT
ACATCAAAGG-

MA0514.1_Sox3/Jaspar

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-TTACAAAGCT
AAAACAAAGG-

CHR/Cell-Cycle-Exp/Homer

Match Rank:6
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TTACAAAGCT
CGGTTTCAAA---

MA0143.3_Sox2/Jaspar

Match Rank:7
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:TTACAAAGCT
-AACAAAGG-

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TTACAAAGCT
RNAACAATGG-

PB0166.1_Sox12_2/Jaspar

Match Rank:9
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----TTACAAAGCT--
AAACAGACAAAGGAAT

PB0071.1_Sox4_1/Jaspar

Match Rank:10
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----TTACAAAGCT---
AGAAGAACAAAGGACTA