Information for motif17


Reverse Opposite:

p-value:1e-15
log p-value:-3.578e+01
Information Content per bp:1.747
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.32%
Average Position of motif in Targets172.0 +/- 76.3bp
Average Position of motif in Background131.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:VAGTCTHAGACT
AGGTGHCAGACA

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:VAGTCTHAGACT-
AGGTGNCAGACAG

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:VAGTCTHAGACT-
-----BCAGACWA

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:VAGTCTHAGACT-
-TTTCTNAGAAAN

PB0203.1_Zfp691_2/Jaspar

Match Rank:5
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------VAGTCTHAGACT
NTNNNAGGAGTCTCNTN--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:VAGTCTHAGACT-
-----CCAGACAG

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----VAGTCTHAGACT
GGCAAAAGTCCAATAA-

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:VAGTCTHAGACT
ATTTCCAAGAA-

PB0006.1_Bcl6b_1/Jaspar

Match Rank:9
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--VAGTCTHAGACT--
NNNATTCCTCGAAAGN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:VAGTCTHAGACT---
-----CCAGACRSVB