Information for motif20


Reverse Opposite:

p-value:1e-14
log p-value:-3.290e+01
Information Content per bp:1.714
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif6.86%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets113.1 +/- 67.7bp
Average Position of motif in Background247.0 +/- 38.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0461.1_Atoh1/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTGCTGGCAC
CAGATGGC--

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:CTGCTGGCAC-
-TGCTGACTCA

MA0498.1_Meis1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:CTGCTGGCAC------
-AGCTGTCACTCACCT

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:CTGCTGGCAC
--CTTGGCAA

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CTGCTGGCAC
---TTGGCA-

Tcf12(HLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGGCAC
CAGCAGCTGN---

Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CTGCTGGCAC
NAHCAGCTGD---

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---CTGCTGGCAC---
NGTAGGTTGGCATNNN

SCL(HLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:9
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTGCTGGCAC
CAGCTGNT--

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----CTGCTGGCAC
VNAVCAGCTGGC--