Information for motif22


Reverse Opposite:

p-value:1e-14
log p-value:-3.290e+01
Information Content per bp:1.761
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif6.86%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets181.5 +/- 80.5bp
Average Position of motif in Background155.4 +/- 83.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0164.1_Smad3_2/Jaspar

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CACACTGGMGWG-----
NAGANTGGCGGGGNGNA

Srebp1a(HLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CACACTGGMGWG--
----ATGGGGTGAT

PB0168.1_Sox14_2/Jaspar

Match Rank:3
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CACACTGGMGWG
CTCACACAATGGCGC-

Srebp2(HLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:CACACTGGMGWG----
----GTGGCGTGACNG

MA0596.1_SREBF2/Jaspar

Match Rank:5
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CACACTGGMGWG--
----ATGGGGTGAT

MA0595.1_SREBF1/Jaspar

Match Rank:6
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CACACTGGMGWG--
----GTGGGGTGAT

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CACACTGGMGWG---
----CTTGAGTGGCT

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:CACACTGGMGWG
AACAAAGG----

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.54
Offset:4
Orientation:reverse strand
Alignment:CACACTGGMGWG--
----CTYRAGTGSY

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----CACACTGGMGWG-
NNTNNACAATGGGANNN