Information for motif27


Reverse Opposite:

p-value:1e-13
log p-value:-3.037e+01
Information Content per bp:1.601
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif7.58%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.95%
Average Position of motif in Targets138.9 +/- 67.9bp
Average Position of motif in Background185.4 +/- 44.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:1
Score:0.67
Offset:5
Orientation:forward strand
Alignment:GCTGGAAACCAC---
-----AAACCACANN

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:forward strand
Alignment:GCTGGAAACCAC--
----NAAACCACAG

MA0002.2_RUNX1/Jaspar

Match Rank:3
Score:0.63
Offset:5
Orientation:reverse strand
Alignment:GCTGGAAACCAC----
-----AAACCACAGAN

MA0152.1_NFATC2/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:GCTGGAAACCAC
--TGGAAAA---

MA0101.1_REL/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GCTGGAAACCAC-
---GGAAANCCCC

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:6
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:GCTGGAAACCAC---
-----AAACCACAGC

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GCTGGAAACCAC
GGCGGGAARN---

MA0511.1_RUNX2/Jaspar

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:GCTGGAAACCAC-------
----CAAACCACAAACCCC

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:9
Score:0.60
Offset:4
Orientation:forward strand
Alignment:GCTGGAAACCAC----
----NWAACCACADNN

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCTGGAAACCAC
-ACTGAAACCA-