Information for motif3


Reverse Opposite:

p-value:1e-21
log p-value:-4.869e+01
Information Content per bp:1.557
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif7.22%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets155.8 +/- 81.2bp
Average Position of motif in Background159.8 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0020.1_Dlx1/Jaspar

Match Rank:1
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GAAGTAATTA--
CTGAGGTAATTAAT

PH0028.1_En1/Jaspar

Match Rank:2
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--GAAGTAATTA----
GCGAACTAATTAATGC

PH0071.1_Hoxc6/Jaspar

Match Rank:3
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GAAGTAATTA------
CAAATTAATTAATAAAA

PH0149.1_Pou3f4/Jaspar

Match Rank:4
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GAAGTAATTA----
AATTAATTAATTAATTC

MA0135.1_Lhx3/Jaspar

Match Rank:5
Score:0.77
Offset:0
Orientation:forward strand
Alignment:GAAGTAATTA---
AAATTAATTAATC

PH0147.1_Pou3f2/Jaspar

Match Rank:6
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--GAAGTAATTA-----
GATAATTAATTAGTTTG

Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.77
Offset:1
Orientation:forward strand
Alignment:GAAGTAATTA-
-ADBTAATTAR

PH0062.1_Hoxb7/Jaspar

Match Rank:8
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--GAAGTAATTA----
TNNCATTAATTANTNC

PB0031.1_Hoxa3_1/Jaspar

Match Rank:9
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GAAGTAATTA--
TGGAGGTAATTAAC

PH0072.1_Hoxc8/Jaspar

Match Rank:10
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GAAGTAATTA----
TTGGGGTAATTAACGT