Information for motif31


Reverse Opposite:

p-value:1e-12
log p-value:-2.912e+01
Information Content per bp:1.933
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif8.30%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets167.9 +/- 77.7bp
Average Position of motif in Background131.3 +/- 67.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0095.2_YY1/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GCAACATG-----
-CAAGATGGCGGC

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GCAACATG
TTGCAACATN

MA0133.1_BRCA1/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:GCAACATG
ACAACAC-

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GCAACATG----
GWAAYHTGABMC

PH0086.1_Irx5/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GCAACATG-------
AATATACATGTAAAATT

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GCAACATG
SCCTAGCAACAG-

MA0104.3_Mycn/Jaspar

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:GCAACATG
GCCACGTG

MA0526.1_USF2/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-GCAACATG--
GGTCACATGAC

PH0085.1_Irx4/Jaspar

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAACATG-------
AATATACATGTAAAACA

PH0084.1_Irx3_2/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCAACATG-------
AATATACATGTAATATA