Information for motif34


Reverse Opposite:

p-value:1e-11
log p-value:-2.675e+01
Information Content per bp:1.754
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif4.69%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets175.0 +/- 87.2bp
Average Position of motif in Background138.9 +/- 92.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGCCAAAGAGC
-AGCCAATCGG-

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAAAGAGC
ACTAGCCAATCA--

MA0161.1_NFIC/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AAGCCAAAGAGC
-TGCCAA-----

MA0002.2_RUNX1/Jaspar

Match Rank:4
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AAGCCAAAGAGC
AAACCACAGAN-

MA0502.1_NFYB/Jaspar

Match Rank:5
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----AAGCCAAAGAGC
AAATGGACCAATCAG-

MA0514.1_Sox3/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AAGCCAAAGAGC
AAAACAAAGG--

MA0515.1_Sox6/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGCCAAAGAGC
AAAACAATGG--

MA0484.1_HNF4G/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AAGCCAAAGAGC-
AGAGTCCAAAGTCCA

HNF4a(NR/DR1)/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AAGCCAAAGAGC-
CANAGNNCAAAGTCCA

MA0511.1_RUNX2/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAGCCAAAGAGC--
CAAACCACAAACCCC