Information for motif39


Reverse Opposite:

p-value:1e-11
log p-value:-2.538e+01
Information Content per bp:1.788
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.66%
Average Position of motif in Targets176.7 +/- 89.0bp
Average Position of motif in Background91.1 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CAACCWTCATTT----
TCACCCATCAATAAACA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CAACCWTCATTT
GYCATCMATCAT--

MA0069.1_Pax6/Jaspar

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAACCWTCATTT
TTCACGCATGAGTT

PB0045.1_Myb_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CAACCWTCATTT-
ATGGAAACCGTTATTTT

PB0176.1_Sox5_2/Jaspar

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CAACCWTCATTT----
-TATCATAATTAAGGA

PB0046.1_Mybl1_1/Jaspar

Match Rank:6
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAACCWTCATTT-
TTGAAAACCGTTAATTT

MA0070.1_PBX1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CAACCWTCATTT
CCATCAATCAAA-

PH0080.1_Hoxd8/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAACCWTCATTT-----
NAGCCATTAATTANTTA

PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:9
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:CAACCWTCATTT---
---GTTTCACTTCCG

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:CAACCWTCATTT--
--ACTTTCACTTTC