Information for motif40


Reverse Opposite:

p-value:1e-11
log p-value:-2.538e+01
Information Content per bp:1.532
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif5.78%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.84%
Average Position of motif in Targets144.4 +/- 81.7bp
Average Position of motif in Background206.3 +/- 88.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.75
Offset:0
Orientation:forward strand
Alignment:ATCCAMGD
ATCCAC--

PB0111.1_Bhlhb2_2/Jaspar

Match Rank:2
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------ATCCAMGD---------
ACCGCCNTCCACGTGTANNGACA

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATCCAMGD-
SSAATCCACANN

c-Myc(HLH)/LNCAP-cMyc-ChIP-Seq(unpublished)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATCCAMGD-
-NCCACGTG

n-Myc(HLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:ATCCAMGD----
--CCACGTGGNN

MA0104.3_Mycn/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:ATCCAMGD-
-GCCACGTG

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:7
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----ATCCAMGD----
NNNAGATCAAAGGANNN

MA0059.1_MYC::MAX/Jaspar

Match Rank:8
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:ATCCAMGD----
-ACCACGTGCTC

PB0040.1_Lef1_1/Jaspar

Match Rank:9
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----ATCCAMGD----
NANAGATCAAAGGGNNN

NPAS2(HLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:ATCCAMGD---
-KCCACGTGAC