Information for motif42


Reverse Opposite:

p-value:1e-10
log p-value:-2.464e+01
Information Content per bp:1.925
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif9.03%
Number of Background Sequences with motif6.4
Percentage of Background Sequences with motif1.81%
Average Position of motif in Targets147.0 +/- 85.3bp
Average Position of motif in Background206.7 +/- 52.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:1
Score:0.80
Offset:-3
Orientation:reverse strand
Alignment:---ATTAAGTG------
NTNNTTAAGTGGNTNAN

MA0063.1_Nkx2-5/Jaspar

Match Rank:2
Score:0.79
Offset:1
Orientation:forward strand
Alignment:ATTAAGTG
-TTAATTG

PH0004.1_Nkx3-2/Jaspar

Match Rank:3
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---ATTAAGTG------
NTNNTTAAGTGGTTANN

MA0122.1_Nkx3-2/Jaspar

Match Rank:4
Score:0.77
Offset:1
Orientation:forward strand
Alignment:ATTAAGTG--
-TTAAGTGGA

PH0041.1_Hmx1/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----ATTAAGTG-----
ANNCATTAATTGCTNGN

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:ATTAAGTG---
-TTAAGTGCTT

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:7
Score:0.73
Offset:-2
Orientation:reverse strand
Alignment:--ATTAAGTG
YCATTAMC--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:ATTAAGTG---
-TTGAGTGSTT

MA0151.1_ARID3A/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:forward strand
Alignment:ATTAAGTG
ATTAAA--

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.72
Offset:1
Orientation:forward strand
Alignment:ATTAAGTG-
-CTAATKGV