Information for motif6


Reverse Opposite:

p-value:1e-19
log p-value:-4.538e+01
Information Content per bp:1.779
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif6.86%
Number of Background Sequences with motif1.8
Percentage of Background Sequences with motif0.51%
Average Position of motif in Targets191.1 +/- 74.0bp
Average Position of motif in Background234.6 +/- 49.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0181.1_Spdef_2/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TAGGAATTGGTT
CTACTAGGATGTNNTN

ETS:RUNX/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TAGGAATTGGTT
ACAGGATGTGGT-

PH0006.1_Barhl2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TAGGAATTGGTT---
NNNTTAATTGGTTTTT

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TAGGAATTGGTT
NCTGGAATGC---

PB0066.1_Sox17_1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TAGGAATTGGTT--
NNATNAATTGTTTNN

Pax7(Paired/Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:6
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TAGGAATTGGTT-
---TAATTGATTA

PH0005.1_Barhl1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-TAGGAATTGGTT---
GNNTTAATTGGTTGTT

PB0115.1_Ehf_2/Jaspar

Match Rank:8
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TAGGAATTGGTT
AAGATCGGAANTNNNA

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TAGGAATTGGTT-----
TNNTCCTTTGTTCTNNT

PH0108.1_Msx3/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-TAGGAATTGGTT---
NNNTTAATTGGTTTTN