Information for motif9


Reverse Opposite:

p-value:1e-18
log p-value:-4.212e+01
Information Content per bp:1.737
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif6.50%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets189.6 +/- 66.3bp
Average Position of motif in Background105.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0203.1_Zfp691_2/Jaspar

Match Rank:1
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----WGGAGTATAA--
NTNNNAGGAGTCTCNTN

PB0174.1_Sox30_2/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-WGGAGTATAA-----
TAAGATTATAATACGG

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----WGGAGTATAA
TTGCCCGGATTAGG-

PB0079.1_Sry_1/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-WGGAGTATAA-----
TATAATTATAATATTC

PH0137.1_Pitx1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----WGGAGTATAA--
TTAGAGGGATTAACAAT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:WGGAGTATAA
-GGATTAGC-

PH0126.1_Obox6/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----WGGAGTATAA
AAAAACGGATTATTG

MA0032.1_FOXC1/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-WGGAGTATAA
GGTAAGTA---

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-WGGAGTATAA
NGGGATTA---

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--WGGAGTATAA
NCTGGAATGC--