| p-value: | 1e-22 |
| log p-value: | -5.275e+01 |
| Information Content per bp: | 1.454 |
| Number of Target Sequences with motif | 25.0 |
| Percentage of Target Sequences with motif | 6.96% |
| Number of Background Sequences with motif | 1.9 |
| Percentage of Background Sequences with motif | 0.70% |
| Average Position of motif in Targets | 161.4 +/- 79.4bp |
| Average Position of motif in Background | 240.6 +/- 15.9bp |
| Strand Bias (log2 ratio + to - strand density) | 1.2 |
| Multiplicity (# of sites on avg that occur together) | 1.75 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer
| Match Rank: | 1 |
| Score: | 0.57
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TGRAGGAWGA-
ATGATKGATGRC |
|
|
|
PH0138.1_Pitx2/Jaspar
| Match Rank: | 2 |
| Score: | 0.56
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -TGRAGGAWGA------
TGAAGGGATTAATCATC |
|
|
|
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer
| Match Rank: | 3 |
| Score: | 0.56
| | Offset: | 2
| | Orientation: | reverse strand |
| Alignment: | TGRAGGAWGA
--NGGGATTA |
|
|
|
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer
| Match Rank: | 4 |
| Score: | 0.56
| | Offset: | 4
| | Orientation: | reverse strand |
| Alignment: | TGRAGGAWGA--
----GGATTAGC |
|
|
|
PH0130.1_Otx2/Jaspar
| Match Rank: | 5 |
| Score: | 0.55
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -TGRAGGAWGA------
TGTAGGGATTAATTGTC |
|
|
|
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer
| Match Rank: | 6 |
| Score: | 0.55
| | Offset: | 3
| | Orientation: | reverse strand |
| Alignment: | TGRAGGAWGA---
---GGGAGGACNG |
|
|
|
PH0125.1_Obox5_2/Jaspar
| Match Rank: | 7 |
| Score: | 0.55
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -TGRAGGAWGA------
NANAGGGATTAATTATN |
|
|
|
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer
| Match Rank: | 8 |
| Score: | 0.54
| | Offset: | 1
| | Orientation: | reverse strand |
| Alignment: | TGRAGGAWGA---
-GWAAYHTGABMC |
|
|
|
PH0137.1_Pitx1/Jaspar
| Match Rank: | 9 |
| Score: | 0.54
| | Offset: | -2
| | Orientation: | forward strand |
| Alignment: | --TGRAGGAWGA-----
TTAGAGGGATTAACAAT |
|
|
|
PH0124.1_Obox5_1/Jaspar
| Match Rank: | 10 |
| Score: | 0.54
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -TGRAGGAWGA------
TAGAGGGATTAAATTTC |
|
|
|
