Information for motif18


Reverse Opposite:

p-value:1e-20
log p-value:-4.681e+01
Information Content per bp:1.829
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif6.41%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets135.9 +/- 77.7bp
Average Position of motif in Background66.4 +/- 16.9bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.09
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--TTGTTTCTAG--
TTTTTTTTCNNGTN

MA0040.1_Foxq1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTGTTTCTAG
TATTGTTTATT-

MA0084.1_SRY/Jaspar

Match Rank:3
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TTGTTTCTAG
ATTGTTTAN--

MA0087.1_Sox5/Jaspar

Match Rank:4
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTGTTTCTAG
ATTGTTA----

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TTGTTTCTAG
ATTGTT-----

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:TTGTTTCTAG--
CTGTTGCTAGGS

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:7
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TTGTTTCTAG
CCATTGTTNY---

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------TTGTTTCTAG-
CNNNTATTGTTCNNNNN

PB0016.1_Foxj1_1/Jaspar

Match Rank:9
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----TTGTTTCTAG-
NNNNTTTGTTTACNNT

PB0093.1_Zfp105_1/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTGTTTCTAG--
NTNTTGTTGTTTGTN