Information for motif19


Reverse Opposite:

p-value:1e-20
log p-value:-4.681e+01
Information Content per bp:1.721
Number of Target Sequences with motif23.0
Percentage of Target Sequences with motif6.41%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.50%
Average Position of motif in Targets140.0 +/- 89.9bp
Average Position of motif in Background7.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TCAGGGGTCCAG---
GGCGAGGGGTCAAGGGC

MA0155.1_INSM1/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--TCAGGGGTCCAG
TGTCAGGGGGCG--

PB0030.1_Hnf4a_1/Jaspar

Match Rank:3
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--TCAGGGGTCCAG---
CTCCAGGGGTCAATTGA

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGGGTCCAG---
NTNNNGGGGTCANGNNN

MA0504.1_NR2C2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TCAGGGGTCCAG
AGGGGTCAGAGGTCA--

MA0512.1_Rxra/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:forward strand
Alignment:TCAGGGGTCCAG
-CAAAGGTCAGA

TR4(NR/DR1)/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----TCAGGGGTCCAG
GAGGTCAAAGGTCA--

PB0099.1_Zfp691_1/Jaspar

Match Rank:8
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---TCAGGGGTCCAG--
CGAACAGTGCTCACTAT

E-box(HLH)/Promoter/Homer

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TCAGGGGTCCAG
TCACGTGACCGG

PAX5-shortForm(Paired/Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TCAGGGGTCCAG-
GTCACGCTCNCTGA