Information for motif2


Reverse Opposite:

p-value:1e-38
log p-value:-8.819e+01
Information Content per bp:1.870
Number of Target Sequences with motif36.0
Percentage of Target Sequences with motif10.03%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.60%
Average Position of motif in Targets169.6 +/- 91.0bp
Average Position of motif in Background111.2 +/- 100.7bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0002.1_Arid5a_1/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---ATAYTGKA---
CTAATATTGCTAAA

MA0078.1_Sox17/Jaspar

Match Rank:2
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATAYTGKA
CTCATTGTC

MA0033.1_FOXL1/Jaspar

Match Rank:3
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----ATAYTGKA
TATACATA-----

PB0063.1_Sox13_1/Jaspar

Match Rank:4
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ATAYTGKA-----
AANTTATTGTTCTNNA

MA0084.1_SRY/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATAYTGKA---
--ATTGTTTAN

PB0183.1_Sry_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---ATAYTGKA------
CNNNTATTGTTCNNNNN

PB0051.1_Osr2_1/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----ATAYTGKA---
CNNNGCTACTGTANNN

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ATAYTGKA-
--ATTGTTA

MF0011.1_HMG_class/Jaspar

Match Rank:9
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ATAYTGKA
--ATTGTT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ATAYTGKA---
GGGATTGCATNN